FvH4_3g42070

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000276
Physical Location & Seq
Reverse (-)
35177319 .. 35178183
865 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42070.t1

Sequence Viewer

Length: 213 bp
ATGACGAATTGTGATTGTTGTTTTCTACCATATATTGTGCAACAAAAGATACTTGTGAAGCTGCACGTTCGTTGCGACAAATGCAGAACTAAGGCTTTCAAGATTGCGGCCACTGCACCTGGTGTGACCAAAGTGTCGATACAAGGTGAAGACAGAGATCATGTGGAGGTGATTGGGGATGGAGTCGACTCGGTTTGCTTGACTAGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

71

Amino Acids

7.75

Weight (kDa)

8.27

Isoelectric Point (pI)

16.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 186
AciI CCGC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 108
AdeI CACNNNGTG 1 cut(s) 122
AgsI TTSAA 1 cut(s) 100
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 158, 181
BbsI GAAGAC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 48
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 120
BfaI CTAG 1 cut(s) 204
BisI GCNGC 2 cut(s) 62, 108
BlsI GCNGC 2 cut(s) 63, 109
Bme1390I CCNGG 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 156
BseBI CCWGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 48
BsgI GTGCAG 2 cut(s) 47, 99
BshFI GGCC 1 cut(s) 110
BsnI GGCC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 110
BssMI GATC 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 81, 113
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 48
BstV2I GAAGAC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
CsiI ACCWGGT 1 cut(s) 118
CviAII CATG 1 cut(s) 161
CviJI RGCY 4 cut(s) 61, 95, 110, 208
CviKI_1 RGCY 4 cut(s) 61, 95, 110, 208
DdeI CTNAG 1 cut(s) 90
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DraIII CACNNNGTG 1 cut(s) 122
DrdI GACNNNNNNGTC 1 cut(s) 133
DseDI GACNNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 118
FaeI CATG 1 cut(s) 164
FaiI YATR 4 cut(s) 31, 33, 162, 211
FatI CATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 62, 108
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 62, 108
FspBI CTAG 1 cut(s) 204
GluI GCNGC 2 cut(s) 62, 108
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 1 cut(s) 164
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 2 cut(s) 183, 188
HphI GGTGA 2 cut(s) 158, 181
Hpy166II GTNNAC 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 4 cut(s) 40, 64, 84, 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 113
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 2 cut(s) 105, 132
Lsp1109I GCAGC 1 cut(s) 48
MabI ACCWGGT 1 cut(s) 118
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 1 cut(s) 161
MluCI AATT 1 cut(s) 7
MlyI GAGTC 2 cut(s) 182, 192
MnlI CCTC 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 81, 113
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PkrI GCNGC 2 cut(s) 63, 109
PleI GAGTC 2 cut(s) 182, 191
PpsI GAGTC 2 cut(s) 182, 191
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
SalI GTCGAC 1 cut(s) 185
SatI GCNGC 2 cut(s) 62, 108
Sau3AI GATC 1 cut(s) 157
SchI GAGTC 2 cut(s) 182, 192
ScrFI CCNGG 1 cut(s) 120
SetI ASST 5 cut(s) 63, 69, 121, 148, 171
SexAI ACCWGGT 1 cut(s) 118
SgeI CNNG 8 cut(s) 65, 77, 112, 131, 132, 155, 173, 202
Sse9I AATT 1 cut(s) 7
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 118
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 137, 186
TasI AATT 1 cut(s) 7
TauI GCSGC 1 cut(s) 110
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 124
TspRI CASTG 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.