Prupe.6G030200_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000276
Physical Location & Seq
Forward (+)
2366295 .. 2366772
478 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G030200.1

Sequence Viewer

Length: 372 bp
ATGCAGCAGAAGATATTGGTGAAGGTGCCAATGCACTGTGACAAATGCAGAACCAAGGCCTTGAAGATTGCAGCAGCTGCACACGGTGTGAGCAAAGTGTCCATTGAAGGAGCAGACAAAGATCACATTGAGGTGATTGGAGATGGGGTTGATTCTGTTTGCTTGACCAGATTGTTAAGGAAGAAGCTTCGCTCCGCCACCATTGTCAAAGTTGAAGAAGTGAAGGAAGCTAAAGCTGATACGAAAGAGGAAAAGCCAACTCCACCAGTTCAATGCATATCATCAGCCAGCTATTGTGCTCCGCAGTGTCCTTCAATGTATTATGGAGTGGTTTGTGAATATCCAGAACCAAACAACTGCTCTATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

124

Amino Acids

13.45

Weight (kDa)

8.4

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AciI CCGC 2 cut(s) 195, 302
AdeI CACNNNGTG 2 cut(s) 86, 88
AgsI TTSAA 5 cut(s) 64, 107, 215, 272, 315
AluBI AGCT 5 cut(s) 77, 187, 230, 236, 291
AluI AGCT 5 cut(s) 77, 187, 230, 236, 291
Alw21I GWGCWC 1 cut(s) 301
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 4 cut(s) 4, 71, 74, 77
AsuHPI GGTGA 2 cut(s) 31, 145
BanI GGYRCC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 4 cut(s) 16, 64, 83, 86
BccI CCATC 1 cut(s) 137
BisI GCNGC 4 cut(s) 5, 72, 75, 78
BlsI GCNGC 4 cut(s) 6, 73, 76, 79
BmiI GGNNCC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse1I ACTGG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 266
BseXI GCAGC 4 cut(s) 16, 64, 83, 86
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 301
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 2 cut(s) 195, 302
BspANI GGCC 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 38, 86
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 289
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstV1I GCAGC 4 cut(s) 16, 64, 83, 86
BsuRI GGCC 1 cut(s) 59
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 2 cut(s) 34, 311
Cac8I GCNNGC 1 cut(s) 289
CaiI CAGNNNCTG 1 cut(s) 77
CviAII CATG 1 cut(s) 367
CviJI RGCY 8 cut(s) 59, 77, 187, 230, 236, 256, 287, 291
CviKI_1 RGCY 8 cut(s) 59, 77, 187, 230, 236, 256, 287, 291
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
DraIII CACNNNGTG 2 cut(s) 86, 88
EciI GGCGGA 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 54
Eco147I AGGCCT 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 370
FaiI YATR 3 cut(s) 278, 324, 368
FatI CATG 1 cut(s) 366
Fnu4HI GCNGC 4 cut(s) 5, 72, 75, 78
Fsp4HI GCNGC 4 cut(s) 5, 72, 75, 78
GluI GCNGC 4 cut(s) 5, 72, 75, 78
HaeIII GGCC 1 cut(s) 59
Hin1II CATG 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 1 cut(s) 152
HphI GGTGA 2 cut(s) 31, 145
Hpy188III TCNNGA 1 cut(s) 344
HpyAV CCTTC 4 cut(s) 16, 101, 217, 321
HpyCH4III ACNGT 2 cut(s) 38, 86
HpyCH4V TGCA 6 cut(s) 4, 34, 48, 71, 80, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
Hsp92II CATG 1 cut(s) 370
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 3 cut(s) 110, 197, 304
LpnPI CCDG 4 cut(s) 181, 279, 301, 357
Lsp1109I GCAGC 4 cut(s) 16, 64, 83, 86
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 4 cut(s) 22, 76, 193, 227
MhlI GDGCHC 1 cut(s) 301
MnlI CCTC 2 cut(s) 124, 241
Mph1103I ATGCAT 1 cut(s) 278
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 278
PceI AGGCCT 1 cut(s) 59
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 4 cut(s) 6, 73, 76, 79
PspN4I GGNNCC 1 cut(s) 27
PstNI CAGNNNCTG 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 4 cut(s) 5, 72, 75, 78
Sau3AI GATC 1 cut(s) 121
SduI GDGCHC 1 cut(s) 301
SetI ASST 7 cut(s) 27, 79, 135, 189, 232, 238, 293
SgeI CNNG 8 cut(s) 67, 73, 95, 175, 180, 278, 300, 356
SmiMI CAYNNNNRTG 1 cut(s) 131
SseBI AGGCCT 1 cut(s) 59
SsiI CCGC 2 cut(s) 195, 302
StuI AGGCCT 1 cut(s) 59
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 38, 86
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 2 cut(s) 41, 311
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 4 cut(s) 4, 71, 74, 77
Tsp45I GTSAC 1 cut(s) 38
TspRI CASTG 2 cut(s) 41, 311
Zsp2I ATGCAT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.