Prupe.6G030900_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000276
Physical Location & Seq
Forward (+)
2409982 .. 2412063
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G030900.1

Sequence Viewer

Length: 396 bp
TTGCAGGAAGATGAAGCAAAACATGTGGTGCACCTTTCTTTACCTCAACAACTAGTCTTTGTCCGGTGGAATCTTGCTAACCAAGATGAGCAAAAGATAGTGATCAAGGTGCAATTGACCTCTGAGAACTGCAGAACCAAGGCCTTGAAGATTGCTGTAGAAGCCAAAGGTGTGAGCAACGTTTGCATAGACGTAGACAAAGCGGAAGTGGAGGTGACTGGAGTTGGAGTTGATGCCGTTTCCTTGGCCGAGTCATTGGAGAAGCAGCTTGGCTTTGCTTCCATTGTAAGTGTTGGAGAAGTGAAAAAACCAGAGGAGCCAGAGCTAGTCATTCTAATTCAATGGACATCAAGCTATATTCACTGTCCACACTATGATGGATTCTGCCGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

132

Amino Acids

14.53

Weight (kDa)

5.17

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 195
AciI CCGC 1 cut(s) 203
AclI AACGTT 1 cut(s) 180
AcoI YGGCCR 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 2 cut(s) 148, 341
AhlI ACTAGT 1 cut(s) 52
AluBI AGCT 3 cut(s) 268, 325, 354
AluI AGCT 3 cut(s) 268, 325, 354
Alw21I GWGCWC 1 cut(s) 33
Alw44I GTGCAC 1 cut(s) 29
AoxI GGCC 2 cut(s) 141, 246
ApaLI GTGCAC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 371
BceAI ACGGC 1 cut(s) 221
BclI TGATCA 1 cut(s) 102
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 2 cut(s) 53, 326
BfmI CTRYAG 2 cut(s) 130, 156
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 318
BmsI GCATC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 138, 243
BsaWI WCCGGW 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bse1I ACTGG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 138, 243
BseJI GATNNNNATC 1 cut(s) 101
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 1 cut(s) 277
BshFI GGCC 2 cut(s) 143, 248
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 64
BsnI GGCC 2 cut(s) 143, 248
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 102
BspACI CCGC 1 cut(s) 203
BspANI GGCC 2 cut(s) 143, 248
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 318
BspMAI CTGCAG 1 cut(s) 134
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 138, 243
BssMI GATC 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 138, 243
Bst4CI ACNGT 1 cut(s) 365
BstAPI GCANNNNNTGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 123
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 161, 183
BstNSI RCATGY 1 cut(s) 26
BstSFI CTRYAG 2 cut(s) 130, 156
BstSLI GKGCMC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 277
BsuRI GGCC 2 cut(s) 143, 248
BtsIMutI CAGTG 1 cut(s) 361
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 1 cut(s) 23
CviJI RGCY 8 cut(s) 143, 164, 248, 268, 273, 319, 325, 354
CviKI_1 RGCY 8 cut(s) 143, 164, 248, 268, 273, 319, 325, 354
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
EaeI YGGCCR 1 cut(s) 246
Eco130I CCWWGG 2 cut(s) 138, 243
Eco147I AGGCCT 1 cut(s) 143
EcoT14I CCWWGG 2 cut(s) 138, 243
ErhI CCWWGG 2 cut(s) 138, 243
FaeI CATG 1 cut(s) 26
FaiI YATR 4 cut(s) 24, 188, 357, 375
FatI CATG 1 cut(s) 22
FbaI TGATCA 1 cut(s) 102
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 2 cut(s) 53, 326
GluI GCNGC 1 cut(s) 266
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 2 cut(s) 143, 248
HapII CCGG 1 cut(s) 64
Hin1II CATG 1 cut(s) 26
HinfI GANTC 3 cut(s) 70, 251, 381
HpaII CCGG 1 cut(s) 64
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 3 cut(s) 31, 196, 368
Hpy188I TCNGA 1 cut(s) 124
Hpy8I GTNNAC 3 cut(s) 31, 196, 368
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 2 cut(s) 180, 192
HpyCH4V TGCA 5 cut(s) 4, 31, 112, 132, 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 183
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 2 cut(s) 180, 192
Hsp92II CATG 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 4 cut(s) 77, 204, 324, 333
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 1 cut(s) 223
MaeI CTAG 2 cut(s) 53, 326
MaeII ACGT 2 cut(s) 180, 192
MaeIII GTNAC 1 cut(s) 214
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 2 cut(s) 20, 160
MfeI CAATTG 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 2 cut(s) 113, 336
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 2 cut(s) 205, 274
MnlI CCTC 4 cut(s) 54, 130, 205, 307
MseI TTAA 1 cut(s) 394
MslI CAYNNNNRTG 1 cut(s) 375
MspI CCGG 1 cut(s) 64
MunI CAATTG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 161, 183
NdeII GATC 1 cut(s) 102
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 318
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 214
NspI RCATGY 1 cut(s) 26
PceI AGGCCT 1 cut(s) 143
PciI ACATGT 1 cut(s) 22
PfeI GAWTC 2 cut(s) 70, 381
PkrI GCNGC 1 cut(s) 267
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PscI ACATGT 1 cut(s) 22
Psp1406I AACGTT 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 318
PstI CTGCAG 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 1 cut(s) 394
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 1 cut(s) 102
SchI GAGTC 1 cut(s) 260
SduI GDGCHC 1 cut(s) 33
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 2 cut(s) 130, 156
SmiMI CAYNNNNRTG 1 cut(s) 375
SpeI ACTAGT 1 cut(s) 52
Sse9I AATT 2 cut(s) 113, 336
SseBI AGGCCT 1 cut(s) 143
SsiI CCGC 1 cut(s) 203
SspMI CTAG 2 cut(s) 53, 326
StuI AGGCCT 1 cut(s) 143
StyI CCWWGG 2 cut(s) 138, 243
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 2 cut(s) 183, 195
TasI AATT 2 cut(s) 113, 336
TfiI GAWTC 2 cut(s) 70, 381
Tru1I TTAA 1 cut(s) 394
Tru9I TTAA 1 cut(s) 394
TscAI CASTG 1 cut(s) 368
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 27
TspRI CASTG 1 cut(s) 368
VneI GTGCAC 1 cut(s) 29
XceI RCATGY 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 2 cut(s) 53, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.