RLG00000036547

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000276
Physical Location & Seq
Reverse (-)
81802713 .. 81803404
692 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036547

Sequence Viewer

Length: 393 bp
ATGTGGAATTTATGTTTTTGTTTTTCAGATTGTCAAAATTCTGTATACTCTTCGGCCTCGACCGTGAAGCAAAAGATAGTGATAAAGGTGCAATTTAGCTCTGAGAAACGCAAAACTAAGGCCTTCAAGACTGCCGCCGGCTTTAAAGGTGTGAGCAGTGTGTCTATAGAAGCAGACAAAGACCAAGTTGTTGTGATCGGAGTCGGAATCGATTCGGTTTGCTTGGCCAAATTGTTGAGGAAGAAACTCAGATATGGCCAAATAGTAAGTGTTGAAGAAGTGAAGAAGCCCAAAGAAGAAAAGAAGCCACAAGTTGAAACTATTCCAATTCAATGGACATCAAGCTATGGTCAATATCCTGTGCACTGTGATGTTGTCTACTGGCCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

131

Amino Acids

14.71

Weight (kDa)

9.3

Isoelectric Point (pI)

22.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 45, 378
AciI CCGC 1 cut(s) 135
AcoI YGGCCR 3 cut(s) 225, 256, 383
AcsI RAATTY 2 cut(s) 7, 37
AgsI TTSAA 4 cut(s) 127, 275, 317, 332
AluBI AGCT 2 cut(s) 99, 345
AluI AGCT 2 cut(s) 99, 345
Alw21I GWGCWC 1 cut(s) 366
Alw44I GTGCAC 1 cut(s) 362
AoxI GGCC 5 cut(s) 54, 120, 225, 256, 383
ApaLI GTGCAC 1 cut(s) 362
ApoI RAATTY 2 cut(s) 7, 37
Asp700I GAANNNNTTC 2 cut(s) 211, 321
BaeGI GKGCMC 1 cut(s) 366
BalI TGGCCA 3 cut(s) 227, 258, 385
Bbv12I GWGCWC 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bsa29I ATCGAT 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 386
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 386
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 386
BseMII CTCAG 2 cut(s) 93, 262
BseNI ACTGG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 366
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 5 cut(s) 56, 122, 227, 258, 385
BshVI ATCGAT 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 1 cut(s) 138
BsnI GGCC 5 cut(s) 56, 122, 227, 258, 385
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 1 cut(s) 195
Bsp19I CCATGG 1 cut(s) 386
BspACI CCGC 1 cut(s) 135
BspANI GGCC 5 cut(s) 56, 122, 227, 258, 385
BspCNI CTCAG 2 cut(s) 94, 261
BspDI ATCGAT 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 386
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 386
BssMI GATC 1 cut(s) 195
BssNAI GTATAC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 386
Bst1107I GTATAC 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 64, 368
Bst6I CTCTTC 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 3 cut(s) 102, 117, 248
BstDSI CCRYGG 1 cut(s) 386
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstMCI CGRYCG 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 366
BstXI CCANNNNNNTGG 1 cut(s) 333
BstZ17I GTATAC 1 cut(s) 46
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 5 cut(s) 56, 122, 227, 258, 385
BsuTUI ATCGAT 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 386
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 163, 364
Cac8I GCNNGC 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 210
CviAII CATG 1 cut(s) 387
DdeI CTNAG 3 cut(s) 102, 117, 248
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
DraI TTTAAA 1 cut(s) 145
EaeI YGGCCR 3 cut(s) 225, 256, 383
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 386
Eco147I AGGCCT 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 386
FaeI CATG 1 cut(s) 390
FaiI YATR 6 cut(s) 13, 46, 167, 255, 348, 388
FatI CATG 1 cut(s) 386
FblI GTMKAC 2 cut(s) 45, 378
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 5 cut(s) 56, 122, 227, 258, 385
HapII CCGG 1 cut(s) 138
Hin1II CATG 1 cut(s) 390
HinfI GANTC 3 cut(s) 201, 207, 212
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 3 cut(s) 46, 364, 379
Hpy188I TCNGA 5 cut(s) 28, 103, 200, 206, 251
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 3 cut(s) 46, 364, 379
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 64, 368
HpyCH4V TGCA 2 cut(s) 91, 364
HpyF3I CTNAG 3 cut(s) 102, 117, 248
Hsp92II CATG 1 cut(s) 390
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 195
LpnPI CCDG 3 cut(s) 151, 367, 372
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 5 cut(s) 42, 253, 287, 295, 308
MhlI GDGCHC 1 cut(s) 366
MlsI TGGCCA 3 cut(s) 227, 258, 385
MluCI AATT 5 cut(s) 7, 37, 92, 230, 327
MluNI TGGCCA 3 cut(s) 227, 258, 385
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 2 cut(s) 67, 231
Mox20I TGGCCA 3 cut(s) 227, 258, 385
MroNI GCCGGC 1 cut(s) 137
MroXI GAANNNNTTC 2 cut(s) 211, 321
MscI TGGCCA 3 cut(s) 227, 258, 385
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 369
Msp20I TGGCCA 3 cut(s) 227, 258, 385
MspI CCGG 1 cut(s) 138
NaeI GCCGGC 1 cut(s) 139
NcoI CCATGG 1 cut(s) 386
NdeII GATC 1 cut(s) 195
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 1 cut(s) 390
PceI AGGCCT 1 cut(s) 122
PdiI GCCGGC 1 cut(s) 139
PdmI GAANNNNTTC 2 cut(s) 211, 321
PfeI GAWTC 2 cut(s) 207, 212
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 1 cut(s) 195
SchI GAGTC 1 cut(s) 210
SduI GDGCHC 1 cut(s) 366
SetI ASST 4 cut(s) 90, 101, 151, 347
SfcI CTRYAG 1 cut(s) 165
SgeI CNNG 9 cut(s) 70, 76, 139, 150, 197, 235, 323, 354, 371
SmiMI CAYNNNNRTG 1 cut(s) 369
Sse9I AATT 5 cut(s) 7, 37, 92, 230, 327
SseBI AGGCCT 1 cut(s) 122
SsiI CCGC 1 cut(s) 135
StuI AGGCCT 1 cut(s) 122
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 2 cut(s) 64, 368
TaqI TCGA 2 cut(s) 59, 210
TasI AATT 5 cut(s) 7, 37, 92, 230, 327
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 2 cut(s) 207, 212
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 2 cut(s) 163, 371
TspRI CASTG 2 cut(s) 163, 371
VneI GTGCAC 1 cut(s) 362
XapI RAATTY 2 cut(s) 7, 37
XmiI GTMKAC 2 cut(s) 45, 378
XmnI GAANNNNTTC 2 cut(s) 211, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.