MD03G1038900.v1.1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000276
Physical Location & Seq
Forward (+)
3087482 .. 3088066
585 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1038900.v1.1.491

Sequence Viewer

Length: 420 bp
ATGTATAAATTGATCATATTGTTTACACATCTTTTGTACAAATTGATGGTGCAGCAAATGAAGATCGTTGTGAAGGTGCCAATGCACTGTGACAAATGCAGAAGAAAGGCCTTGAAGATTGCAGCTCGTGCACAGGGTGTTAGTAAAGTGTCGATAGAAGGAGAAAACAAAGATCTTGTGGAGGTGATCGGGGATGATGTAGACTCGGTTTGCTTGACGAGGTCATTGAGGAAAAAGCTCGGCTGTTCCTGCACCATAGTCAAAGTTGAAGAAGTGAAGCCGGCAGTTAAAACTGAGGAAAAGTCAACTCCAGCTCCTTCAGCAAGCTGTGTTCAATACTGTTGCACTCCCCAGTTTCGTCCAATGTACTGTGAACTGGTTCATGAATATCCAGAACCAACCACTTGCTCCATAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

140

Amino Acids

15.67

Weight (kDa)

8.8

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 2 cut(s) 38, 368
AgsI TTSAA 3 cut(s) 115, 269, 335
AluBI AGCT 4 cut(s) 125, 238, 314, 327
AluI AGCT 4 cut(s) 125, 238, 314, 327
Alw21I GWGCWC 1 cut(s) 133
Alw44I GTGCAC 1 cut(s) 129
AoxI GGCC 1 cut(s) 108
ApaLI GTGCAC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 52, 122
Asp700I GAANNNNTTC 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 76
BauI CACGAG 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 64, 134
BccI CCATC 1 cut(s) 40
BclI TGATCA 1 cut(s) 12
BglII AGATCT 1 cut(s) 172
BisI GCNGC 2 cut(s) 53, 123
BlsI GCNGC 2 cut(s) 54, 124
BmiI GGNNCC 1 cut(s) 78
BmrI ACTGGG 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 346
BpmI CTGGAG 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 2 cut(s) 352, 381
BseGI GGATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 352, 381
BseSI GKGCMC 1 cut(s) 133
BseXI GCAGC 2 cut(s) 64, 134
BsgI GTGCAG 2 cut(s) 71, 235
BshFI GGCC 1 cut(s) 110
BshNI GGYRCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 281
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 36
Bsp143I GATC 4 cut(s) 12, 63, 172, 186
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 286
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 36
BsrI ACTGG 2 cut(s) 352, 381
BssAI RCCGGY 1 cut(s) 280
BssMI GATC 4 cut(s) 12, 63, 172, 186
BssSI CACGAG 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 126
Bst4CI ACNGT 3 cut(s) 89, 341, 371
BstAPI GCANNNNNTGC 1 cut(s) 128
BstAUI TGTACA 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 282, 325
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 4 cut(s) 15, 66, 175, 189
BstMBI GATC 4 cut(s) 12, 63, 172, 186
BstMWI GCNNNNNNNGC 3 cut(s) 128, 249, 320
BstSLI GKGCMC 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 64, 134
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 282, 325
CciI TCATGA 1 cut(s) 382
Cfr10I RCCGGY 1 cut(s) 280
Csp6I GTAC 2 cut(s) 37, 367
CviAII CATG 1 cut(s) 383
CviJI RGCY 7 cut(s) 110, 125, 238, 243, 280, 314, 327
CviKI_1 RGCY 7 cut(s) 110, 125, 238, 243, 280, 314, 327
CviQI GTAC 2 cut(s) 37, 367
DdeI CTNAG 1 cut(s) 294
DpnI GATC 4 cut(s) 14, 65, 174, 188
DpnII GATC 4 cut(s) 12, 63, 172, 186
DraIII CACNNNGTG 1 cut(s) 137
Eco147I AGGCCT 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 303
FaeI CATG 1 cut(s) 386
FaiI YATR 5 cut(s) 6, 17, 257, 384, 413
FatI CATG 1 cut(s) 382
FbaI TGATCA 1 cut(s) 12
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 53, 123
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 53, 123
GluI GCNGC 2 cut(s) 53, 123
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 1 cut(s) 110
HapII CCGG 1 cut(s) 281
Hin1II CATG 1 cut(s) 386
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 1 cut(s) 203
HpaII CCGG 1 cut(s) 281
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 5 cut(s) 24, 131, 202, 306, 374
Hpy188III TCNNGA 2 cut(s) 383, 392
Hpy8I GTNNAC 5 cut(s) 24, 131, 202, 306, 374
HpyAV CCTTC 3 cut(s) 67, 152, 327
HpyCH4III ACNGT 3 cut(s) 89, 341, 371
HpyCH4V TGCA 7 cut(s) 52, 85, 99, 122, 131, 252, 345
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 249, 320
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 1 cut(s) 386
KroI GCCGGC 1 cut(s) 280
KroNI GCCGGC 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 4 cut(s) 12, 63, 172, 186
LmnI GCTCC 2 cut(s) 319, 413
LpnPI CCDG 7 cut(s) 119, 262, 294, 324, 362, 365, 405
Lsp1109I GCAGC 2 cut(s) 64, 134
MaeIII GTNAC 1 cut(s) 89
MalI GATC 4 cut(s) 14, 65, 174, 188
MboI GATC 4 cut(s) 12, 63, 172, 186
MboII GAAGA 4 cut(s) 73, 114, 127, 281
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 2 cut(s) 8, 41
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 4 cut(s) 175, 213, 222, 289
MroNI GCCGGC 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 1 cut(s) 288
MspI CCGG 1 cut(s) 281
MwoI GCNNNNNNNGC 3 cut(s) 128, 249, 320
NaeI GCCGGC 1 cut(s) 282
NdeII GATC 4 cut(s) 12, 63, 172, 186
NgoMIV GCCGGC 1 cut(s) 280
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 1 cut(s) 78
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 89
PagI TCATGA 1 cut(s) 382
PceI AGGCCT 1 cut(s) 110
PdiI GCCGGC 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 378
PflFI GACNNNGTC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 54, 124
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 78
PsuI RGATCY 1 cut(s) 172
PsyI GACNNNGTC 1 cut(s) 220
RsaI GTAC 2 cut(s) 38, 368
RsaNI GTAC 2 cut(s) 37, 367
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 53, 123
Sau3AI GATC 4 cut(s) 12, 63, 172, 186
SchI GAGTC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 133
SetI ASST 7 cut(s) 78, 127, 186, 224, 240, 316, 329
Sse9I AATT 2 cut(s) 8, 41
SseBI AGGCCT 1 cut(s) 110
StuI AGGCCT 1 cut(s) 110
TaaI ACNGT 3 cut(s) 89, 341, 371
TaqI TCGA 1 cut(s) 152
TasI AATT 2 cut(s) 8, 41
TatI WGTACW 2 cut(s) 36, 366
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 92
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 2 cut(s) 52, 122
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 3 cut(s) 74, 371, 399
TspRI CASTG 1 cut(s) 92
Tth111I GACNNNGTC 1 cut(s) 220
VneI GTGCAC 1 cut(s) 129
XmiI GTMKAC 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.