Rmu_sc0002564.1_g000016

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002564.1
OG0000276
Physical Location & Seq
Forward (+)
74174 .. 74630
457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002564.1_g000016.1.cds

Sequence Viewer

Length: 345 bp
atgaccattgaggcgaacatttggtgtgacaaatgtcggtccaaggccatgaaaacagctgctgcagaagatggtgttgaatcagtggctttcaagggggcaaggagagaccaaatagagataatcggagacgatgttgatgcaacgggattgaccggattgctgaggaagaagctcggctatgcagacttagtgagcttggaagaaataaccgaaacgaaagttgataaagaggaaacgaaacctatccctgattgtccaattaggggaagaagaggttgtcaccaccatgagatggaattgcacatctatgatgcaccatcagggggttgcactattatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

114

Amino Acids

12.57

Weight (kDa)

5.34

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 295
AfiI CCNNNNNNNGG 3 cut(s) 266, 295, 326
AgsI TTSAA 2 cut(s) 80, 94
AluBI AGCT 3 cut(s) 59, 175, 198
AluI AGCT 3 cut(s) 59, 175, 198
Alw26I GTCTC 2 cut(s) 102, 123
AlwNI CAGNNNCTG 1 cut(s) 62
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 59, 62
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 275
AvaII GGWCC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 46, 49
BccI CCATC 3 cut(s) 65, 289, 328
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BcoDI GTCTC 2 cut(s) 102, 123
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 2 cut(s) 60, 63
BlsI GCNGC 2 cut(s) 61, 64
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmsI GCATC 2 cut(s) 130, 304
BoxI GACNNNNGTC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 295, 326
BseDI CCNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 3 cut(s) 266, 295, 326
BseMII CTCAG 1 cut(s) 155
BseXI GCAGC 2 cut(s) 46, 49
BshFI GGCC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 3 cut(s) 266, 295, 326
BsmAI GTCTC 2 cut(s) 102, 123
BsmBI CGTCTC 1 cut(s) 123
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 102
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 164, 190
BstMAI GTCTC 2 cut(s) 102, 123
BstPAI GACNNNNGTC 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 46, 49
BsuRI GGCC 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 39
CviAII CATG 2 cut(s) 49, 290
CviJI RGCY 6 cut(s) 47, 59, 89, 175, 180, 198
CviKI_1 RGCY 6 cut(s) 47, 59, 89, 175, 180, 198
DdeI CTNAG 2 cut(s) 164, 190
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 2 cut(s) 52, 293
FaiI YATR 5 cut(s) 50, 183, 291, 312, 341
FatI CATG 2 cut(s) 48, 289
Fnu4HI GCNGC 2 cut(s) 60, 63
Fsp4HI GCNGC 2 cut(s) 60, 63
GluI GCNGC 2 cut(s) 60, 63
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 156
Hin1II CATG 2 cut(s) 52, 293
HinfI GANTC 1 cut(s) 80
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 275
Hpy188I TCNGA 1 cut(s) 128
HpyCH4V TGCA 6 cut(s) 65, 143, 185, 304, 317, 333
HpyF3I CTNAG 2 cut(s) 164, 190
Hsp92II CATG 2 cut(s) 52, 293
LpnPI CCDG 3 cut(s) 169, 264, 309
Lsp1109I GCAGC 2 cut(s) 46, 49
LweI GCATC 2 cut(s) 130, 304
MaeIII GTNAC 2 cut(s) 26, 281
MboII GAAGA 5 cut(s) 80, 181, 215, 282, 285
MluCI AATT 2 cut(s) 261, 299
MnlI CCTC 4 cut(s) 4, 159, 226, 269
MslI CAYNNNNRTG 3 cut(s) 288, 309, 338
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 1 cut(s) 156
NlaIII CATG 2 cut(s) 52, 293
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 26, 281
PfeI GAWTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 2 cut(s) 61, 64
PshAI GACNNNNGTC 1 cut(s) 33
PspPI GGNCC 1 cut(s) 39
PstI CTGCAG 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 62
PvuII CAGCTG 1 cut(s) 59
RseI CAYNNNNRTG 3 cut(s) 288, 309, 338
SatI GCNGC 2 cut(s) 60, 63
Sau96I GGNCC 1 cut(s) 39
SetI ASST 5 cut(s) 61, 177, 200, 247, 280
SfaNI GCATC 2 cut(s) 130, 304
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 39
SmiMI CAYNNNNRTG 3 cut(s) 288, 309, 338
Sse9I AATT 2 cut(s) 261, 299
StyI CCWWGG 1 cut(s) 42
TaqII GACCGA 1 cut(s) 27
TasI AATT 2 cut(s) 261, 299
TfiI GAWTC 1 cut(s) 80
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 2 cut(s) 26, 281
TseI GCWGC 2 cut(s) 59, 62
Tsp45I GTSAC 2 cut(s) 26, 281
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.