Prupe.4G001900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000276
Physical Location & Seq
Forward (+)
163305 .. 163783
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G001900.1

Sequence Viewer

Length: 231 bp
ATGAAGTGTAAGACTAAGAAGATTGAGATGAAAGTACCTATGAATTGCCAGAAATGCCAACAGAAGGCATTCAAAATTATTGCTGAAGCAGATGGTGTGACCTTTTTGGGATTAAGAGAGGAGAGAGACATAGTGGTGGTGATTGGTCAAGGAGTAGACGCCTGCAACTTGGCTAAGAGCTTAAGGAAAAAGTTTAAGACTACTGACATTATCACCGTCGCAGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

77

Amino Acids

8.49

Weight (kDa)

9.36

Isoelectric Point (pI)

20.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 64
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 120
Asp700I GAANNNNTTC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 151, 205
BccI CCATC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 120
BfrI CTTAAG 1 cut(s) 181
BsaHI GRCGYC 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 68
BspTI CTTAAG 1 cut(s) 181
BssNI GRCGYC 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 217
BstACI GRCGYC 1 cut(s) 159
BstAFI CTTAAG 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 15, 174
BstMAI GTCTC 1 cut(s) 120
BstMWI GCNNNNNNNGC 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 163
CseI GACGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 35
CviJI RGCY 2 cut(s) 173, 180
CviKI_1 RGCY 2 cut(s) 173, 180
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 2 cut(s) 15, 174
Eco57I CTGAAG 1 cut(s) 105
FaiI YATR 3 cut(s) 41, 131, 229
FblI GTMKAC 1 cut(s) 156
HgaI GACGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 159
HphI GGTGA 2 cut(s) 151, 205
Hpy166II GTNNAC 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 2 cut(s) 15, 174
Hsp92I GRCGYC 1 cut(s) 159
LpnPI CCDG 2 cut(s) 62, 175
MaeIII GTNAC 1 cut(s) 97
MboII GAAGA 1 cut(s) 31
MluCI AATT 2 cut(s) 43, 75
MnlI CCTC 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 3 cut(s) 113, 182, 195
MslI CAYNNNNRTG 1 cut(s) 134
MspCI CTTAAG 1 cut(s) 181
Mva1269I GAATGC 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 97
PctI GAATGC 1 cut(s) 68
PdmI GAANNNNTTC 1 cut(s) 68
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 3 cut(s) 113, 182, 195
SetI ASST 3 cut(s) 40, 104, 182
SgeI CNNG 4 cut(s) 61, 161, 174, 181
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 2 cut(s) 43, 75
TaaI ACNGT 1 cut(s) 217
TasI AATT 2 cut(s) 43, 75
Tru1I TTAA 3 cut(s) 113, 182, 195
Tru9I TTAA 3 cut(s) 113, 182, 195
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 17, 44, 56
Vha464I CTTAAG 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.