Rh5DG302900

Heavy-metal-associated domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
38051864 .. 38052230
367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG302900.1

Sequence Viewer

Length: 216 bp
ATGAGAAGCCGAAAACGTCGTGCCAAGGCCATGAAGATAGCTGCTGTCGCTGATGGTGTCAATTCAGTGGCTTTCAATGAGGAAAACAGAGATCAAATCGTAGTGATTGGACATGGAGTTGATCCAGTTGGCTTAGCCCTCTCTTTGAGGAAGAAGGTTGGCCATGCTACCTTGTTGAATGTGGAAGAACTAGTGGAACAAGCGGAAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

7.75

Weight (kDa)

6.73

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 203
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 160
AgsI TTSAA 2 cut(s) 76, 178
AhlI ACTAGT 1 cut(s) 190
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AlwI GGATC 1 cut(s) 116
AoxI GGCC 2 cut(s) 27, 160
ApeKI GCWGC 1 cut(s) 41
BalI TGGCCA 1 cut(s) 162
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 47
BcuI ACTAGT 1 cut(s) 190
BfaI CTAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 42
BlpI GCTNAGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 43
Bpu1102I GCTNAGC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 2 cut(s) 29, 162
BsnI GGCC 2 cut(s) 29, 162
Bsp143I GATC 2 cut(s) 91, 121
Bsp1720I GCTNAGC 1 cut(s) 133
BspACI CCGC 1 cut(s) 203
BspANI GGCC 2 cut(s) 29, 162
BspPI GGATC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 91, 121
BssT1I CCWWGG 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 133
BstKTI GATC 2 cut(s) 94, 124
BstMBI GATC 2 cut(s) 91, 121
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 29, 162
BtsIMutI CAGTG 1 cut(s) 72
CviAII CATG 3 cut(s) 31, 113, 164
CviJI RGCY 7 cut(s) 9, 29, 41, 71, 132, 137, 162
CviKI_1 RGCY 7 cut(s) 9, 29, 41, 71, 132, 137, 162
DdeI CTNAG 1 cut(s) 133
DpnI GATC 2 cut(s) 93, 123
DpnII GATC 2 cut(s) 91, 121
EaeI YGGCCR 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 3 cut(s) 34, 116, 167
FaiI YATR 3 cut(s) 32, 114, 165
FatI CATG 3 cut(s) 30, 112, 163
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 191
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 2 cut(s) 29, 162
Hin1II CATG 3 cut(s) 34, 116, 167
Hpy99I CGWCG 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 133
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 3 cut(s) 34, 116, 167
Kzo9I GATC 2 cut(s) 91, 121
LpnPI CCDG 1 cut(s) 138
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 16
MalI GATC 2 cut(s) 93, 123
MboI GATC 2 cut(s) 91, 121
MboII GAAGA 3 cut(s) 46, 163, 197
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 1 cut(s) 61
MluNI TGGCCA 1 cut(s) 162
MnlI CCTC 3 cut(s) 73, 141, 149
Mox20I TGGCCA 1 cut(s) 162
MscI TGGCCA 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 2 cut(s) 91, 121
NlaIII CATG 3 cut(s) 34, 116, 167
PkrI GCNGC 1 cut(s) 43
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 91, 121
SetI ASST 4 cut(s) 19, 43, 159, 173
SgeI CNNG 9 cut(s) 32, 37, 43, 125, 137, 176, 184, 203, 212
SpeI ACTAGT 1 cut(s) 190
Sse9I AATT 1 cut(s) 61
SsiI CCGC 1 cut(s) 203
SspMI CTAG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 24
TaiI ACGT 1 cut(s) 19
TasI AATT 1 cut(s) 61
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 1 cut(s) 72
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.