pycom03g02940

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000276
Physical Location & Seq
Forward (+)
2296362 .. 2296835
474 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g02940.1

Sequence Viewer

Length: 369 bp
ATGGTGCAGCAAATGAAGATCGTTGTGAAGGTGCCAATGCACTGTGACAAATGCAGAACCAAGGCCTTGAAGATTGCAGCTGCTGCACACGGTGTTAGTAAAGTGTCGATAGAAGGAGTAAACAAAGATCATGTCGAGGTGATAGGGGATGATGTAGACTCGGTTTGCTTGACGAGGTCATTGAGGAAAAAGCTCGGCTGTTCCTGCACCATAATCAAAGTTGAAGAAGTGAAGCCGGCAGTTAAAACTGAGAAAAAGCCAGCTCCTTCAGCAAGCTGTGTTCAATACTGTTGCACTCCTCAGTTTCGTCCAATGTACTGTGAACTGGTTCATGAATATCCAGAACCAACCACTTGCTCCATAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

123

Amino Acids

13.47

Weight (kDa)

8.68

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 252
AdeI CACNNNGTG 1 cut(s) 92
AfaI GTAC 1 cut(s) 317
AgsI TTSAA 3 cut(s) 70, 224, 284
AluBI AGCT 4 cut(s) 80, 193, 263, 276
AluI AGCT 4 cut(s) 80, 193, 263, 276
AlwNI CAGNNNCTG 1 cut(s) 83
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 4 cut(s) 7, 77, 80, 83
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
Asp700I GAANNNNTTC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 151
BanI GGYRCC 1 cut(s) 31
BbvI GCAGC 4 cut(s) 19, 67, 70, 89
BisI GCNGC 4 cut(s) 8, 78, 81, 84
BlsI GCNGC 4 cut(s) 9, 79, 82, 85
BmiI GGNNCC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 60
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 240, 314
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 288
BseXI GCAGC 4 cut(s) 19, 67, 70, 89
BsgI GTGCAG 3 cut(s) 26, 69, 190
BshFI GGCC 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 236
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 18, 127
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 241, 313
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 2 cut(s) 18, 127
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 4 cut(s) 44, 92, 290, 320
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 237, 261, 274
BstDEI CTNAG 2 cut(s) 249, 300
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 2 cut(s) 21, 130
BstMBI GATC 2 cut(s) 18, 127
BstMWI GCNNNNNNNGC 3 cut(s) 83, 204, 269
BstV1I GCAGC 4 cut(s) 19, 67, 70, 89
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 3 cut(s) 237, 261, 274
CaiI CAGNNNCTG 1 cut(s) 83
CciI TCATGA 1 cut(s) 331
Cfr10I RCCGGY 1 cut(s) 235
Csp6I GTAC 1 cut(s) 316
CviAII CATG 2 cut(s) 131, 332
CviJI RGCY 8 cut(s) 65, 80, 193, 198, 235, 259, 263, 276
CviKI_1 RGCY 8 cut(s) 65, 80, 193, 198, 235, 259, 263, 276
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 2 cut(s) 249, 300
DpnI GATC 2 cut(s) 20, 129
DpnII GATC 2 cut(s) 18, 127
DraIII CACNNNGTG 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 60
Eco147I AGGCCT 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 2 cut(s) 134, 335
FaiI YATR 4 cut(s) 132, 212, 333, 362
FatI CATG 2 cut(s) 130, 331
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 4 cut(s) 8, 78, 81, 84
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 4 cut(s) 8, 78, 81, 84
GluI GCNGC 4 cut(s) 8, 78, 81, 84
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 236
Hin1II CATG 2 cut(s) 134, 335
HinfI GANTC 1 cut(s) 158
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 3 cut(s) 121, 157, 323
Hpy188III TCNNGA 2 cut(s) 332, 341
Hpy8I GTNNAC 3 cut(s) 121, 157, 323
HpyAV CCTTC 3 cut(s) 22, 107, 276
HpyCH4III ACNGT 4 cut(s) 44, 92, 290, 320
HpyCH4V TGCA 7 cut(s) 7, 40, 54, 77, 86, 207, 294
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 204, 269
HpyF3I CTNAG 2 cut(s) 249, 300
Hsp92II CATG 2 cut(s) 134, 335
KroI GCCGGC 1 cut(s) 235
KroNI GCCGGC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 18, 127
LmnI GCTCC 2 cut(s) 268, 362
LpnPI CCDG 5 cut(s) 217, 249, 273, 311, 354
Lsp1109I GCAGC 4 cut(s) 19, 67, 70, 89
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 20, 129
MboI GATC 2 cut(s) 18, 127
MboII GAAGA 3 cut(s) 28, 82, 236
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 4 cut(s) 130, 168, 177, 309
MroNI GCCGGC 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 1 cut(s) 236
MwoI GCNNNNNNNGC 3 cut(s) 83, 204, 269
NaeI GCCGGC 1 cut(s) 237
NdeII GATC 2 cut(s) 18, 127
NgoMIV GCCGGC 1 cut(s) 235
NlaIII CATG 2 cut(s) 134, 335
NlaIV GGNNCC 1 cut(s) 33
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 44
PagI TCATGA 1 cut(s) 331
PceI AGGCCT 1 cut(s) 65
PdiI GCCGGC 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 327
PflFI GACNNNGTC 1 cut(s) 175
PkrI GCNGC 4 cut(s) 9, 79, 82, 85
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 33
PstNI CAGNNNCTG 1 cut(s) 83
PsyI GACNNNGTC 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 4 cut(s) 8, 78, 81, 84
Sau3AI GATC 2 cut(s) 18, 127
SchI GAGTC 1 cut(s) 152
SetI ASST 7 cut(s) 33, 82, 141, 179, 195, 265, 278
SseBI AGGCCT 1 cut(s) 65
StuI AGGCCT 1 cut(s) 65
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 4 cut(s) 44, 92, 290, 320
TaqI TCGA 2 cut(s) 107, 135
TatI WGTACW 1 cut(s) 315
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 4 cut(s) 7, 77, 80, 83
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 3 cut(s) 29, 320, 348
TspRI CASTG 1 cut(s) 47
Tth111I GACNNNGTC 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.