MD03G1188500.v1.1

seed storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000276
Physical Location & Seq
Reverse (-)
25783331 .. 25784378
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1188500.v1.1.491

Sequence Viewer

Length: 240 bp
ATGATGCAAAAGATTGTCATTGAGGTGCAAATGAGAAGCAGGAGACGTCGTGCCAAGGCCATGAAGATAGCTGCTGTCGCTGATGGTGTTAATTCAGTGGCTTTCAATGAGGAAAAGAAAGACCAGATGGTGATAATTGGAGATGAAGTTGATGCAGCTAGCTTAGCTCTCTCTTTGAGGAAGAAGGTTGGCCATGCTACCTTAGTGATTGTGGAAGAAATAGTACTGGAAGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

80

Amino Acids

8.78

Weight (kDa)

8.09

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 49
AcoI YGGCCR 1 cut(s) 190
AcyI GRCGYC 1 cut(s) 46
AfaI GTAC 1 cut(s) 225
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 4 cut(s) 71, 158, 162, 167
AluI AGCT 4 cut(s) 71, 158, 162, 167
Alw26I GTCTC 1 cut(s) 37
AoxI GGCC 2 cut(s) 57, 190
ApeKI GCWGC 2 cut(s) 71, 155
AsuHPI GGTGA 1 cut(s) 142
AsuNHI GCTAGC 1 cut(s) 158
BalI TGGCCA 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 207, 239
BbvI GCAGC 2 cut(s) 58, 167
BccI CCATC 2 cut(s) 77, 121
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 159
BisI GCNGC 2 cut(s) 72, 156
BlpI GCTNAGC 1 cut(s) 163
BlsI GCNGC 2 cut(s) 73, 157
BmcAI AGTACT 1 cut(s) 225
BmsI GCATC 1 cut(s) 142
BmtI GCTAGC 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 4 cut(s) 34, 64, 132, 162
Bse1I ACTGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 58, 167
BshFI GGCC 2 cut(s) 59, 192
BsmAI GTCTC 1 cut(s) 37
BsmBI CGTCTC 1 cut(s) 37
BsnI GGCC 2 cut(s) 59, 192
Bsp1720I GCTNAGC 1 cut(s) 163
BspANI GGCC 2 cut(s) 59, 192
BspOI GCTAGC 1 cut(s) 162
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 163, 202
BstMAI GTCTC 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 77, 164
BstV1I GCAGC 2 cut(s) 58, 167
BsuRI GGCC 2 cut(s) 59, 192
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 224
CviAII CATG 2 cut(s) 61, 194
CviJI RGCY 7 cut(s) 59, 71, 101, 158, 162, 167, 192
CviKI_1 RGCY 7 cut(s) 59, 71, 101, 158, 162, 167, 192
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 2 cut(s) 163, 202
EaeI YGGCCR 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 2 cut(s) 64, 197
FaiI YATR 4 cut(s) 62, 195, 236, 238
FatI CATG 2 cut(s) 60, 193
Fnu4HI GCNGC 2 cut(s) 72, 156
Fsp4HI GCNGC 2 cut(s) 72, 156
FspBI CTAG 1 cut(s) 159
GluI GCNGC 2 cut(s) 72, 156
HaeIII GGCC 2 cut(s) 59, 192
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 2 cut(s) 64, 197
HphI GGTGA 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 3 cut(s) 7, 28, 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 164
HpyF3I CTNAG 2 cut(s) 163, 202
HpySE526I ACGT 1 cut(s) 46
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 2 cut(s) 64, 197
LpnPI CCDG 3 cut(s) 25, 137, 212
Lsp1109I GCAGC 2 cut(s) 58, 167
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 46
MboII GAAGA 3 cut(s) 76, 193, 227
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 2 cut(s) 91, 135
MluNI TGGCCA 1 cut(s) 192
MnlI CCTC 3 cut(s) 16, 103, 171
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 77, 164
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 2 cut(s) 64, 197
PkrI GCNGC 2 cut(s) 73, 157
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 72, 156
ScaI AGTACT 1 cut(s) 225
SetI ASST 8 cut(s) 27, 49, 73, 160, 164, 169, 189, 203
SfaNI GCATC 1 cut(s) 142
SgeI CNNG 7 cut(s) 52, 62, 67, 73, 136, 171, 206
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 2 cut(s) 91, 135
SspMI CTAG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 54
TaiI ACGT 1 cut(s) 49
TasI AATT 2 cut(s) 91, 135
TatI WGTACW 1 cut(s) 223
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 102
TseI GCWGC 2 cut(s) 71, 155
TspDTI ATGAA 2 cut(s) 77, 159
TspRI CASTG 1 cut(s) 102
XspI CTAG 1 cut(s) 159
ZraI GACGTC 1 cut(s) 47
ZrmI AGTACT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.