pycom03g03010

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000276
Physical Location & Seq
Forward (+)
2364691 .. 2364936
246 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g03010.1

Sequence Viewer

Length: 246 bp
ATGTGGTGGTCGATCGGAGACAGAGTTGATGCCGTTGACTTGGCTAAATCATTGAAGAAGAAGTTTGGCTTTGCCACCATAATAAGTGTTGAAGAAGTGGGAAAACCGGAAGAAGTGGAAAAACCGAAAGAAGTGGAAAAACCGGAAGAACAGCCAGCTGAGCCAATTCAGTGGCCATCAAGCTATATTCACTGTCCACAGTATCCAGCTGTGCTGTACTACTATGATGGATTCTACAGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

82

Amino Acids

9.52

Weight (kDa)

4.91

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 173
AfaI GTAC 1 cut(s) 218
AgsI TTSAA 2 cut(s) 55, 92
AluBI AGCT 3 cut(s) 158, 183, 209
AluI AGCT 3 cut(s) 158, 183, 209
Alw26I GTCTC 1 cut(s) 12
AoxI GGCC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 175
BccI CCATC 3 cut(s) 184, 221, 234
BceAI ACGGC 1 cut(s) 17
BciVI GTATCC 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 235
BfuI GTATCC 1 cut(s) 213
BlpI GCTNAGC 1 cut(s) 159
BmsI GCATC 1 cut(s) 19
Bpu1102I GCTNAGC 1 cut(s) 159
BsaWI WCCGGW 2 cut(s) 106, 142
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
BseMII CTCAG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 175
BsiEI CGRYCG 1 cut(s) 15
BsiSI CCGG 2 cut(s) 107, 143
BsmAI GTCTC 1 cut(s) 12
BsnI GGCC 1 cut(s) 175
Bsp143I GATC 1 cut(s) 12
Bsp1720I GCTNAGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 151
BssMI GATC 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 194, 201
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 159
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 12
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 171
BsuI GTATCC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 176, 190
Cac8I GCNNGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 217
CviJI RGCY 8 cut(s) 44, 69, 154, 158, 163, 175, 183, 209
CviKI_1 RGCY 8 cut(s) 44, 69, 154, 158, 163, 175, 183, 209
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 173
FaiI YATR 3 cut(s) 80, 186, 225
FalI AAGNNNNNCTT 2 cut(s) 53, 85
HaeIII GGCC 1 cut(s) 175
HapII CCGG 2 cut(s) 107, 143
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 1 cut(s) 231
HpaII CCGG 2 cut(s) 107, 143
Hpy166II GTNNAC 2 cut(s) 37, 197
Hpy188I TCNGA 1 cut(s) 17
Hpy8I GTNNAC 2 cut(s) 37, 197
HpyCH4III ACNGT 2 cut(s) 194, 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 1 cut(s) 159
Kzo9I GATC 1 cut(s) 12
LpnPI CCDG 4 cut(s) 120, 156, 168, 219
LweI GCATC 1 cut(s) 19
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 5 cut(s) 67, 70, 104, 122, 158
MlsI TGGCCA 1 cut(s) 175
MluCI AATT 1 cut(s) 165
MluNI TGGCCA 1 cut(s) 175
Mox20I TGGCCA 1 cut(s) 175
MscI TGGCCA 1 cut(s) 175
Msp20I TGGCCA 1 cut(s) 175
MspA1I CMGCKG 2 cut(s) 158, 209
MspI CCGG 2 cut(s) 107, 143
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 231
Ple19I CGATCG 1 cut(s) 15
PvuI CGATCG 1 cut(s) 15
PvuII CAGCTG 2 cut(s) 158, 209
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
Sau3AI GATC 1 cut(s) 12
SetI ASST 3 cut(s) 160, 185, 211
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 235
SgeI CNNG 6 cut(s) 52, 119, 155, 167, 192, 218
Sse9I AATT 1 cut(s) 165
TaaI ACNGT 2 cut(s) 194, 201
TaqI TCGA 1 cut(s) 11
TasI AATT 1 cut(s) 165
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 231
TscAI CASTG 2 cut(s) 176, 197
TspRI CASTG 2 cut(s) 176, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.