Prupe.6G031100_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000276
Physical Location & Seq
Forward (+)
2419987 .. 2422247
2261 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G031100.1

Sequence Viewer

Length: 315 bp
ATGAAGCAAAAGATAGTCATGAAGGTGCAGCTGAAGTCTGAGAAATGCAGAACCAAGGCCTTGAAGATTGCTGCGGTGGCCAAAGGTGTGAGCAAAGTATCGATAGAAATGGAGAAAGAGCATGTGGAGGTGATTGGAGACGGAGTCGATGCGGTTGACTTGGCCAAATCATTGAAGAAGAAGCTTGGTTATGCCACCATAGTGAGTGTTGAAGAAGTGAAGAAACCAGATGATGCAAAGCCAGTTGTTCCAATTGAATGGACACCAAGCTATATTCACTATCCTGTGCACTACGATGGATACTACCTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

105

Amino Acids

11.72

Weight (kDa)

9.08

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 74, 152
AcoI YGGCCR 2 cut(s) 78, 162
AcuI CTGAAG 1 cut(s) 53
AgsI TTSAA 4 cut(s) 64, 175, 212, 257
AleI CACNNNNGTG 1 cut(s) 200
AluBI AGCT 3 cut(s) 31, 184, 270
AluI AGCT 3 cut(s) 31, 184, 270
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 132
Alw44I GTGCAC 1 cut(s) 287
AoxI GGCC 3 cut(s) 57, 78, 162
ApaLI GTGCAC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 28, 71
AsuHPI GGTGA 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 291
BalI TGGCCA 2 cut(s) 80, 164
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 40, 58
BccI CCATC 1 cut(s) 290
BciVI GTATCC 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 132
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 2 cut(s) 29, 72
BlsI GCNGC 2 cut(s) 30, 73
BmsI GCATC 2 cut(s) 139, 223
Bsa29I ATCGAT 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bse1I ACTGG 1 cut(s) 242
BseCI ATCGAT 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 2 cut(s) 40, 58
BsgI GTGCAG 1 cut(s) 47
BshFI GGCC 3 cut(s) 59, 80, 164
BshVI ATCGAT 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsnI GGCC 3 cut(s) 59, 80, 164
Bsp1286I GDGCHC 1 cut(s) 291
BspACI CCGC 2 cut(s) 74, 152
BspANI GGCC 3 cut(s) 59, 80, 164
BspCNI CTCAG 1 cut(s) 31
BspDI ATCGAT 1 cut(s) 101
BspHI TCATGA 1 cut(s) 18
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 125
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 40, 58
BstXI CCANNNNNNTGG 1 cut(s) 258
Bsu15I ATCGAT 1 cut(s) 101
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 3 cut(s) 59, 80, 164
BsuTUI ATCGAT 1 cut(s) 101
CciI TCATGA 1 cut(s) 18
ClaI ATCGAT 1 cut(s) 101
CviAII CATG 2 cut(s) 19, 122
CviJI RGCY 7 cut(s) 31, 59, 80, 164, 184, 241, 270
CviKI_1 RGCY 7 cut(s) 31, 59, 80, 164, 184, 241, 270
DdeI CTNAG 1 cut(s) 39
EaeI YGGCCR 2 cut(s) 78, 162
Eco130I CCWWGG 1 cut(s) 54
Eco147I AGGCCT 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 2 cut(s) 22, 125
FaiI YATR 5 cut(s) 20, 123, 192, 200, 273
FatI CATG 2 cut(s) 18, 121
Fnu4HI GCNGC 2 cut(s) 29, 72
Fsp4HI GCNGC 2 cut(s) 29, 72
GluI GCNGC 2 cut(s) 29, 72
HaeIII GGCC 3 cut(s) 59, 80, 164
Hin1II CATG 2 cut(s) 22, 125
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 1 cut(s) 144
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 157, 289
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 2 cut(s) 157, 289
HpyAV CCTTC 1 cut(s) 16
HpyCH4V TGCA 4 cut(s) 28, 48, 236, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 2 cut(s) 22, 125
LpnPI CCDG 4 cut(s) 240, 255, 295, 297
Lsp1109I GCAGC 2 cut(s) 40, 58
LweI GCATC 2 cut(s) 139, 223
MboII GAAGA 5 cut(s) 76, 187, 190, 224, 232
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 291
MlsI TGGCCA 2 cut(s) 80, 164
MluCI AATT 1 cut(s) 252
MluNI TGGCCA 2 cut(s) 80, 164
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 1 cut(s) 121
Mox20I TGGCCA 2 cut(s) 80, 164
MscI TGGCCA 2 cut(s) 80, 164
MslI CAYNNNNRTG 3 cut(s) 23, 200, 294
Msp20I TGGCCA 2 cut(s) 80, 164
MspA1I CMGCKG 1 cut(s) 31
MunI CAATTG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 77
NlaIII CATG 2 cut(s) 22, 125
NspI RCATGY 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 200
PagI TCATGA 1 cut(s) 18
PceI AGGCCT 1 cut(s) 59
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 30, 73
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 31
RseI CAYNNNNRTG 3 cut(s) 23, 200, 294
SatI GCNGC 2 cut(s) 29, 72
SchI GAGTC 1 cut(s) 153
SduI GDGCHC 1 cut(s) 291
SetI ASST 7 cut(s) 27, 33, 88, 132, 186, 272, 309
SfaNI GCATC 2 cut(s) 139, 223
SmiMI CAYNNNNRTG 3 cut(s) 23, 200, 294
Sse9I AATT 1 cut(s) 252
SseBI AGGCCT 1 cut(s) 59
SsiI CCGC 2 cut(s) 74, 152
StuI AGGCCT 1 cut(s) 59
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 2 cut(s) 101, 147
TasI AATT 1 cut(s) 252
TseI GCWGC 2 cut(s) 28, 71
TspDTI ATGAA 2 cut(s) 17, 35
TspGWI ACGGA 1 cut(s) 156
Tth111I GACNNNGTC 1 cut(s) 143
VneI GTGCAC 1 cut(s) 287
XceI RCATGY 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.