Rmu_sc0000770.1_g000049

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000770.1
OG0000276
Physical Location & Seq
Forward (+)
255986 .. 257592
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000770.1_g000049.1.cds

Sequence Viewer

Length: 471 bp
atgaagcaaaagattgtgatgaaggtgcaatttagctctgagaaacgcagaaccgatgccttcaagattgctgccggcactaaaggtgtcagcgatgtgtcgatagaagcaggtaaagaccaagttgtggtgatcggagatggggttgactcggtttgcttggcccagtcattaaggaagaagctccgatacgtcgaaatagtaagtgttgaagaggtgaaaaagcccgatgaaaaaaagacgccagaagttgagagtattccaattcaatggacatctagctatgtccaccatcccatgcactatgatgttgtgtaccgttggacacctgcaccgacattgcggcgaaagcctggcaaagccagactaatccactgcaccgcagacgcacgaacccaaagggtccctcaaatctgctggccacgggatggagctgggattcgaacgctagacctgggggttccagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

156

Amino Acids

17.55

Weight (kDa)

9.51

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 337
Acc36I ACCTGC 2 cut(s) 101, 337
AccB7I CCANNNNNTGG 2 cut(s) 127, 428
AciI CCGC 2 cut(s) 343, 381
AcoI YGGCCR 1 cut(s) 419
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 2 cut(s) 127, 428
AgsI TTSAA 3 cut(s) 64, 212, 269
AjnI CCWGG 2 cut(s) 352, 453
AluBI AGCT 4 cut(s) 36, 184, 282, 434
AluI AGCT 4 cut(s) 36, 184, 282, 434
AoxI GGCC 2 cut(s) 162, 419
ApeKI GCWGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 163, 403
AsuHPI GGTGA 2 cut(s) 142, 229
AsuII TTCGAA 1 cut(s) 442
AvaII GGWCC 1 cut(s) 403
BalI TGGCCA 1 cut(s) 421
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbvI GCAGC 1 cut(s) 58
BccI CCATC 3 cut(s) 134, 300, 422
BciT130I CCWGG 2 cut(s) 354, 455
BfaI CTAG 3 cut(s) 279, 449, 469
BfuAI ACCTGC 2 cut(s) 101, 337
BisI GCNGC 2 cut(s) 72, 344
BlsI GCNGC 2 cut(s) 73, 345
Bme1390I CCNGG 2 cut(s) 354, 455
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 2 cut(s) 163, 403
BmiI GGNNCC 3 cut(s) 404, 405, 462
BmrFI CCNGG 2 cut(s) 354, 455
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 160
Bpu14I TTCGAA 1 cut(s) 442
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 422, 454
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 428
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 338
BseBI CCWGG 2 cut(s) 354, 455
BseDI CCNNGG 2 cut(s) 422, 454
BseGI GGATG 2 cut(s) 292, 433
BseLI CCNNNNNNNGG 2 cut(s) 127, 428
BseMI GCAATG 1 cut(s) 338
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 434
BsgI GTGCAG 2 cut(s) 315, 361
BshFI GGCC 2 cut(s) 164, 421
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 2 cut(s) 127, 428
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 2 cut(s) 164, 421
Bsp119I TTCGAA 1 cut(s) 442
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 2 cut(s) 343, 381
BspANI GGCC 2 cut(s) 164, 421
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 3 cut(s) 404, 405, 462
BspMI ACCTGC 2 cut(s) 101, 337
BspT104I TTCGAA 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 422, 454
BssMI GATC 1 cut(s) 132
BssNI GRCGYC 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 354, 455
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 442
BstC8I GCNNGC 2 cut(s) 76, 419
BstDEI CTNAG 1 cut(s) 39
BstDSI CCRYGG 1 cut(s) 422
BstF5I GGATG 2 cut(s) 292, 433
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstNI CCWGG 2 cut(s) 354, 455
BstSCI CCNGG 2 cut(s) 352, 453
BstV1I GCAGC 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 270
BsuRI GGCC 2 cut(s) 164, 421
BtgI CCRYGG 1 cut(s) 422
BtgZI GCGATG 1 cut(s) 108
BtsCI GGATG 2 cut(s) 292, 433
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 373
BveI ACCTGC 2 cut(s) 101, 337
Cac8I GCNNGC 2 cut(s) 76, 419
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 163, 403
CseI GACGC 2 cut(s) 250, 395
Csp6I GTAC 1 cut(s) 316
CviAII CATG 1 cut(s) 298
CviJI RGCY 9 cut(s) 36, 164, 184, 226, 282, 352, 362, 421, 434
CviKI_1 RGCY 9 cut(s) 36, 164, 184, 226, 282, 352, 362, 421, 434
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 419
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 352, 453
FaeI CATG 1 cut(s) 301
FaiI YATR 3 cut(s) 285, 299, 306
FaqI GGGAC 1 cut(s) 389
FatI CATG 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 72, 344
FokI GGATG 2 cut(s) 279, 440
Fsp4HI GCNGC 2 cut(s) 72, 344
FspBI CTAG 3 cut(s) 279, 449, 469
GluI GCNGC 2 cut(s) 72, 344
GsaI CCCAGC 1 cut(s) 438
HaeIII GGCC 2 cut(s) 164, 421
HapII CCGG 1 cut(s) 75
HgaI GACGC 2 cut(s) 250, 395
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 1 cut(s) 301
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 149, 439
HpaII CCGG 1 cut(s) 75
HphI GGTGA 2 cut(s) 142, 229
Hpy166II GTNNAC 3 cut(s) 148, 289, 316
Hpy188I TCNGA 3 cut(s) 40, 137, 188
Hpy188III TCNNGA 2 cut(s) 64, 464
Hpy8I GTNNAC 3 cut(s) 148, 289, 316
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 16, 70
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 4 cut(s) 28, 301, 332, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 1 cut(s) 301
KflI GGGWCCC 1 cut(s) 403
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 2 cut(s) 189, 431
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 46
MaeI CTAG 3 cut(s) 279, 449, 469
MaeII ACGT 1 cut(s) 192
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 2 cut(s) 190, 224
MlsI TGGCCA 1 cut(s) 421
MluCI AATT 2 cut(s) 29, 264
MluNI TGGCCA 1 cut(s) 421
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 302
MnlI CCTC 2 cut(s) 208, 417
Mox20I TGGCCA 1 cut(s) 421
MroNI GCCGGC 1 cut(s) 74
MscI TGGCCA 1 cut(s) 421
MseI TTAA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 306
Msp20I TGGCCA 1 cut(s) 421
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 2 cut(s) 354, 455
MvaI CCWGG 2 cut(s) 354, 455
MwoI GCNNNNNNNGC 1 cut(s) 349
NaeI GCCGGC 1 cut(s) 76
NdeII GATC 1 cut(s) 132
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 3 cut(s) 404, 405, 462
NspV TTCGAA 1 cut(s) 442
PaqCI CACCTGC 1 cut(s) 337
PdiI GCCGGC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 439
PflMI CCANNNNNTGG 2 cut(s) 127, 428
PkrI GCNGC 2 cut(s) 73, 345
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 403
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 2 cut(s) 352, 453
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 2 cut(s) 352, 453
PspN4I GGNNCC 3 cut(s) 404, 405, 462
PspPI GGNCC 2 cut(s) 163, 403
PspPPI RGGWCCY 1 cut(s) 403
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 2 cut(s) 72, 344
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 2 cut(s) 163, 403
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 354, 455
SfaNI GCATC 1 cut(s) 46
SfuI TTCGAA 1 cut(s) 442
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 2 cut(s) 29, 264
SsiI CCGC 2 cut(s) 343, 381
SspMI CTAG 3 cut(s) 279, 449, 469
StyD4I CCNGG 2 cut(s) 352, 453
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 195
TaqI TCGA 3 cut(s) 101, 195, 442
TasI AATT 2 cut(s) 29, 264
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 380
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 17, 35, 246
TspRI CASTG 1 cut(s) 380
Van91I CCANNNNNTGG 2 cut(s) 127, 428
VpaK11BI GGWCC 1 cut(s) 403
XspI CTAG 3 cut(s) 279, 449, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.