MD11G1204400.v1.1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000276
Physical Location & Seq
Reverse (-)
29835437 .. 29836447
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1204400.v1.1.491

Sequence Viewer

Length: 225 bp
ATGAAGCAAACCATAACCATTGAGGCGCAGTTTAGATGTGCAAAATGTCGGTCCAAGGCCATGGAAATAGCTGTTGCAGAAGACGGTGTAACATCAGTGGCCTTTAAGGGGGCCAATAGAGATCAACTGGTGATTACCGGAGATGGAGTTGATGCAGCGGGGTTGGCCAAGTCATTGAGGAAGAAGCTTGGCCATGCAGACTTGCTGAGTGTAGAAGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

75

Amino Acids

7.89

Weight (kDa)

8.68

Isoelectric Point (pI)

25.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 158
AcoI YGGCCR 2 cut(s) 165, 190
AfiI CCNNNNNNNGG 1 cut(s) 108
AluBI AGCT 2 cut(s) 71, 187
AluI AGCT 2 cut(s) 71, 187
AoxI GGCC 5 cut(s) 57, 99, 111, 165, 190
ApeKI GCWGC 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 51, 111
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 51
BalI TGGCCA 2 cut(s) 167, 192
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 167
BccI CCATC 1 cut(s) 137
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 51, 111
BmiI GGNNCC 1 cut(s) 112
BmsI GCATC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 54, 60
BsaWI WCCGGW 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 54, 60
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 167
BshFI GGCC 5 cut(s) 59, 101, 113, 167, 192
BsiSI CCGG 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 108
BsnI GGCC 5 cut(s) 59, 101, 113, 167, 192
Bsp143I GATC 1 cut(s) 121
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 1 cut(s) 158
BspANI GGCC 5 cut(s) 59, 101, 113, 167, 192
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 112
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 54, 60
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 2 cut(s) 54, 60
Bst4CI ACNGT 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 206
BstDSI CCRYGG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 87
BstXI CCANNNNNNTGG 1 cut(s) 61
BsuRI GGCC 5 cut(s) 59, 101, 113, 167, 192
BtgI CCRYGG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 102
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 51, 111
CviAII CATG 2 cut(s) 61, 194
CviJI RGCY 7 cut(s) 59, 71, 101, 113, 167, 187, 192
CviKI_1 RGCY 7 cut(s) 59, 71, 101, 113, 167, 187, 192
DdeI CTNAG 1 cut(s) 206
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
EaeI YGGCCR 2 cut(s) 165, 190
Eco130I CCWWGG 2 cut(s) 54, 60
Eco47I GGWCC 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 54, 60
ErhI CCWWGG 2 cut(s) 54, 60
FaeI CATG 2 cut(s) 64, 197
FaiI YATR 3 cut(s) 14, 62, 195
FatI CATG 2 cut(s) 60, 193
FauI CCCGC 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
GlaI GCGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 5 cut(s) 59, 101, 113, 167, 192
HapII CCGG 1 cut(s) 138
HhaI GCGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 64, 197
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 185
HpaII CCGG 1 cut(s) 138
HphI GGTGA 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 4 cut(s) 41, 77, 155, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 2 cut(s) 64, 197
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 2 cut(s) 113, 151
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 2 cut(s) 92, 193
MlsI TGGCCA 2 cut(s) 167, 192
MluNI TGGCCA 2 cut(s) 167, 192
MnlI CCTC 2 cut(s) 16, 171
Mox20I TGGCCA 2 cut(s) 167, 192
MscI TGGCCA 2 cut(s) 167, 192
MseI TTAA 1 cut(s) 105
Msp20I TGGCCA 2 cut(s) 167, 192
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 164
NcoI CCATGG 1 cut(s) 60
NdeII GATC 1 cut(s) 121
NlaIII CATG 2 cut(s) 64, 197
NlaIV GGNNCC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 2 cut(s) 51, 111
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 121
Sau96I GGNCC 2 cut(s) 51, 111
SetI ASST 2 cut(s) 73, 189
SfaNI GCATC 1 cut(s) 142
SgeI CNNG 9 cut(s) 67, 73, 140, 150, 171, 181, 200, 206, 214
SinI GGWCC 1 cut(s) 51
SsiI CCGC 1 cut(s) 158
StyI CCWWGG 2 cut(s) 54, 60
TaaI ACNGT 1 cut(s) 86
TaqII GACCGA 1 cut(s) 39
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 102
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.