Rw5G045910

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000276
Physical Location & Seq
Reverse (-)
79947184 .. 79947911
728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G045910.1

Sequence Viewer

Length: 327 bp
ATGAAGCAAAAGATTGTGATGAAGGTGCAATTTAGCTCTGAGAAACGCAGAACCGATGCCTTCAAGATTGCTGCCGGCACTAAAGGTGTCAGCGATGTGTCGATAGAAGCAGGTAAAGACCAAGTTGTGGTGATCGGAGATGGGGTTGACTCGGTTTGCTTGGCCCAGTCATTAAGGAAGAAGCTCCGATACGTCGAAATAGTAAGTGTTGAAGAGGTGAAAAAGCCCGATGAAAAAAAGACGCCAGAAGTTGAGAGTATTCCAATTCAATGGACATCTAGCTATGTCCACCATCCCATGCACTATGATGTTGTGTACCGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

108

Amino Acids

12.29

Weight (kDa)

8.99

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 127
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 3 cut(s) 64, 212, 269
AluBI AGCT 3 cut(s) 36, 184, 282
AluI AGCT 3 cut(s) 36, 184, 282
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 142, 229
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 134, 300
BfaI CTAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 101
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 58
BshFI GGCC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 127
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 1 cut(s) 132
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 74
BssMI GATC 1 cut(s) 132
BssNI GRCGYC 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 270
BsuRI GGCC 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 292
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 316
CviAII CATG 1 cut(s) 298
CviJI RGCY 5 cut(s) 36, 164, 184, 226, 282
CviKI_1 RGCY 5 cut(s) 36, 164, 184, 226, 282
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
FaeI CATG 1 cut(s) 301
FaiI YATR 3 cut(s) 285, 299, 306
FatI CATG 1 cut(s) 297
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 1 cut(s) 301
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 75
HphI GGTGA 2 cut(s) 142, 229
Hpy166II GTNNAC 3 cut(s) 148, 289, 316
Hpy188I TCNGA 3 cut(s) 40, 137, 188
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 3 cut(s) 148, 289, 316
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 16, 70
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 28, 301
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 1 cut(s) 301
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 4 cut(s) 88, 96, 179, 258
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 192
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 2 cut(s) 190, 224
MluCI AATT 2 cut(s) 29, 264
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 1 cut(s) 208
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 1 cut(s) 75
NaeI GCCGGC 1 cut(s) 76
NdeII GATC 1 cut(s) 132
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 1 cut(s) 301
PdiI GCCGGC 1 cut(s) 76
PflMI CCANNNNNTGG 1 cut(s) 127
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 163
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 143
SetI ASST 8 cut(s) 27, 38, 88, 115, 186, 195, 219, 284
SfaNI GCATC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 2 cut(s) 29, 264
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 101, 195
TasI AATT 2 cut(s) 29, 264
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 17, 35, 246
Van91I CCANNNNNTGG 1 cut(s) 127
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.