FvH4_3g24100

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000276
Physical Location & Seq
Forward (+)
17125981 .. 17127001
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24100.t1

Sequence Viewer

Length: 345 bp
ATGTTGAAGCAAAAGATAACCATTGAGGCGAACATTTGGTGCGACAAATGCCGGTCCAAGGCCATGAAAATAGCTGCTGTAGAAGATGGTGTTAAATCAGTGGCTTTTAAGGGGCCAAGGAGAGACCAAATAGAGATAATCGGAGACGGGGTTGATGCAGCGAGGCTGGCCAAATTGCTGAGGAAGAAGCTCGGCTATGCAGACTTGGTGAGCGTGGAAGAAATTGCCGAAAAGATAGTTAAGATTCCGAATAGTCCAAACATGGGAAGAAGAGGTTGTCATCATCATGAGATGGAATTACACATCTATGATCCACCATCATCAGGGGGTTGCACCATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

115

Amino Acids

12.64

Weight (kDa)

8.95

Isoelectric Point (pI)

58.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05030 AT4G05030
fragaria_vesca FvH4_3g24080 FvH4_3g24080 FvH4_3g24100 FvH4_3g24100 FvH4_3g42050 FvH4_3g42060 FvH4_3g42070 FvH4_3g42071 FvH4_3g42080 FvH4_3g42090 FvH4_3g42100 FvH4_3g42110
malus_domestica MD03G1038100.v1.1 MD03G1038400.v1.1 MD03G1038600.v1.1 MD03G1038900.v1.1 MD03G1039000.v1.1 MD03G1039100.v1.1 MD03G1188500.v1.1 MD10G1233100.v1.1 MD10G1233300.v1.1 MD10G1341200.v1.1 MD11G1039200.v1.1 MD11G1039300.v1.1 MD11G1204400.v1.1 MD11G1204600.v1.1
prunus_persica Prupe.2G123900_v2.0.a1 Prupe.4G001900_v2.0.a1 Prupe.4G234700_v2.0.a1 Prupe.4G234800_v2.0.a1 Prupe.6G025900_v2.0.a1 Prupe.6G030200_v2.0.a1 Prupe.6G030300_v2.0.a1 Prupe.6G030400_v2.0.a1 Prupe.6G030600_v2.0.a1 Prupe.6G030900_v2.0.a1 Prupe.6G031000_v2.0.a1 Prupe.6G031100_v2.0.a1 Prupe.6G031100_v2.0.a1
pyrus_communis pycom03g02940 pycom03g02950 pycom03g02980 pycom03g02990 pycom03g03010 pycom11g03310 pycom11g03320
rosa_chinensis RchiOBHm_Chr3g0484311 RchiOBHm_Chr5g0000231 RchiOBHm_Chr5g0042661 RchiOBHm_Chr5g0042671 RchiOBHm_Chr5g0075281 RchiOBHm_Chr5g0075291 RchiOBHm_Chr5g0075321 RchiOBHm_Chr5g0075331
rosa_laevigata RLG00000034149 RLG00000036545 RLG00000036546 RLG00000036547 RLG00000036548 RLG00000036549 RLG00000036550
rosa_multiflora Rmu_sc0000295.1_g000011 Rmu_sc0000770.1_g000041 Rmu_sc0000770.1_g000049 Rmu_sc0002564.1_g000002 Rmu_sc0002564.1_g000003 Rmu_sc0002564.1_g000016
rosa_roxburghii Rroxscaffold_1G00006200 Rroxscaffold_1G00006210 Rroxscaffold_1G00006220 Rroxscaffold_1G00006250 Rroxscaffold_1G00006270 Rroxscaffold_1G00037900 Rroxscaffold_1G00037980 Rroxscaffold_6G00397790
rosa_rugosa Rorug03G0210600 Rorug05G0203800 Rorug05G0203900 Rorug05G0438100 Rorug05G0438200 Rorug05G0438700 Rorug05G0438900 Rorug05G0438900
rosa_samantha Rh3AG259700 Rh3AG259800 Rh3BG296300 Rh3DG289900 Rh5AG001600 Rh5AG288900 Rh5AG289000 Rh5AG289200 Rh5AG494800 Rh5AG495000 Rh5AG495200 Rh5AG495300 Rh5BG293000 Rh5BG293100 Rh5BG293300 Rh5BG516400 Rh5BG516500 Rh5BG516900 Rh5BG517000 Rh5CG001900 Rh5CG325700 Rh5CG325900 Rh5CG326000 Rh5CG540200 Rh5CG540300 Rh5CG540500 Rh5CG540600 Rh5DG001900 Rh5DG302900 Rh5DG303000 Rh5DG303200 Rh5DG529100 Rh5DG529300 Rh5DG529400 Rh5DG532500
rosa_wichuraiana Rw3G023420 Rw3G023430 Rw5G000210 Rw5G026800 Rw5G045910 Rw5G045920 Rw5G045930 Rw5G045940 Rw5G045950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 168
AfiI CCNNNNNNNGG 3 cut(s) 58, 263, 323
AgsI TTSAA 1 cut(s) 7
AluBI AGCT 2 cut(s) 74, 190
AluI AGCT 2 cut(s) 74, 190
Alw26I GTCTC 2 cut(s) 117, 138
AlwI GGATC 1 cut(s) 305
AoxI GGCC 3 cut(s) 60, 113, 168
ApeKI GCWGC 2 cut(s) 74, 158
AspS9I GGNCC 2 cut(s) 54, 113
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 170
BbvCI CCTCAGC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 61, 170
BccI CCATC 3 cut(s) 80, 286, 325
BcoDI GTCTC 2 cut(s) 117, 138
BfmI CTRYAG 1 cut(s) 78
BisI GCNGC 2 cut(s) 75, 159
BlsI GCNGC 2 cut(s) 76, 160
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 2 cut(s) 54, 113
BmiI GGNNCC 1 cut(s) 114
BmsI GCATC 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 57, 116
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 263, 323
Bse118I RCCGGY 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 57, 116
BseLI CCNNNNNNNGG 3 cut(s) 58, 263, 323
BseMII CTCAG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 61, 170
BshFI GGCC 3 cut(s) 62, 115, 170
BsiSI CCGG 1 cut(s) 52
BslI CCNNNNNNNGG 3 cut(s) 58, 263, 323
BsmAI GTCTC 2 cut(s) 117, 138
BsmBI CGTCTC 1 cut(s) 138
BsnI GGCC 3 cut(s) 62, 115, 170
Bso31I GGTCTC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 310
BspANI GGCC 3 cut(s) 62, 115, 170
BspCNI CTCAG 1 cut(s) 171
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 57, 116
BssMI GATC 1 cut(s) 310
BssT1I CCWWGG 2 cut(s) 57, 116
Bst6I CTCTTC 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 179
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 117, 138
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 2 cut(s) 48, 167
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 61, 170
BsuRI GGCC 3 cut(s) 62, 115, 170
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 168
CciI TCATGA 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 54, 113
CviAII CATG 3 cut(s) 64, 262, 287
CviJI RGCY 8 cut(s) 62, 74, 104, 115, 166, 170, 190, 195
CviKI_1 RGCY 8 cut(s) 62, 74, 104, 115, 166, 170, 190, 195
DdeI CTNAG 1 cut(s) 179
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco130I CCWWGG 2 cut(s) 57, 116
Eco31I GGTCTC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 54
EcoT14I CCWWGG 2 cut(s) 57, 116
ErhI CCWWGG 2 cut(s) 57, 116
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 3 cut(s) 67, 265, 290
FaiI YATR 6 cut(s) 65, 198, 263, 288, 309, 341
FatI CATG 3 cut(s) 63, 261, 286
Fnu4HI GCNGC 2 cut(s) 75, 159
Fsp4HI GCNGC 2 cut(s) 75, 159
GluI GCNGC 2 cut(s) 75, 159
HaeIII GGCC 3 cut(s) 62, 115, 170
HapII CCGG 1 cut(s) 52
Hin1II CATG 3 cut(s) 67, 265, 290
HinfI GANTC 1 cut(s) 244
HpaII CCGG 1 cut(s) 52
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 143, 249
Hpy188III TCNNGA 1 cut(s) 287
HpyCH4V TGCA 3 cut(s) 158, 200, 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 167
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 3 cut(s) 67, 265, 290
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 3 cut(s) 65, 152, 309
Lsp1109I GCAGC 2 cut(s) 61, 170
LweI GCATC 1 cut(s) 145
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 5 cut(s) 95, 196, 230, 279, 282
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 3 cut(s) 173, 222, 296
MluNI TGGCCA 1 cut(s) 170
MnlI CCTC 4 cut(s) 19, 156, 174, 266
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MseI TTAA 3 cut(s) 93, 108, 240
MslI CAYNNNNRTG 3 cut(s) 285, 306, 338
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 48, 167
NdeII GATC 1 cut(s) 310
NlaIII CATG 3 cut(s) 67, 265, 290
NlaIV GGNNCC 1 cut(s) 114
NmeAIII GCCGAG 1 cut(s) 171
PagI TCATGA 1 cut(s) 286
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 2 cut(s) 76, 160
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 2 cut(s) 54, 113
RseI CAYNNNNRTG 3 cut(s) 285, 306, 338
SaqAI TTAA 3 cut(s) 93, 108, 240
SatI GCNGC 2 cut(s) 75, 159
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 2 cut(s) 54, 113
SetI ASST 3 cut(s) 76, 192, 277
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 78
SinI GGWCC 1 cut(s) 54
SmiMI CAYNNNNRTG 3 cut(s) 285, 306, 338
Sse9I AATT 3 cut(s) 173, 222, 296
StyI CCWWGG 2 cut(s) 57, 116
TasI AATT 3 cut(s) 173, 222, 296
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 3 cut(s) 93, 108, 240
Tru9I TTAA 3 cut(s) 93, 108, 240
TscAI CASTG 1 cut(s) 105
TseI GCWGC 2 cut(s) 74, 158
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.