AT4G11260

Protein SGT1 homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
6851184 .. 6853912
2729 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G11260.1

Sequence Viewer

Length: 1077 bp
ATGGCCAAGGAATTAGCAGAGAAAGCTAAAGAAGCTTTTCTAGATGATGACTTCGATGTTGCTGTTGACTTATACTCCAAAGCCATTGACTTGGATCCCAATTGCGCCGCCTTCTTCGCCGATCGTGCTCAGGCCAACATCAAAATCGATAACTTCACTGAAGCTGTTGTAGATGCGAACAAAGCCATTGAGTTGGAGCCAACGTTGGCAAAAGCCTATCTCAGAAAGGGCACTGCTTGTATGAAGCTAGAAGAATATAGTACTGCTAAAGCAGCCCTGGAAAAGGGAGCTTCTGTTGCACCGAATGAACCAAAGTTTAAGAAGATGATAGATGAATGCGATCTTCGTATTGCAGAAGAAGAGAAAGATTTGGTTCAGCCGATGCCACCGAGTTTGCCTTCAAGCTCTACAACACCACTAGCAACGGAAGCTGATGCTCCTCCTGTTCCAATTCCTGCAGCACCTGCCAAACCGATGTTCAGGCACGAGTTCTACCAGAAACCAGAAGAAGCGGTGGTGACAATTTTCGCCAAAAAAGTACCTAAGGAGAACGTAACTGTCGAGTTTGGTGAGCAGATTCTGAGTGTTGTCATTGATGTTGCTGGAGAGGAAGCTTATCATCTCCAGCCGAGATTGTTCGGGAAGATAATACCAGAGAAGTGCAGATTTGAAGTATTGTCGACCAAAGTTGAGATCCGTCTTGCGAAAGCAGAGATAATCACCTGGGCCTCCCTTGAATATGGTAAAGGGCAAAGTGTTTTGCCCAAACCCAATGTCTCATCAGCGCTGTCGCAGAGACCAGTGTACCCATCTTCTAAGCCAGCAAAAGACTGGGACAAGTTGGAAGCTGAAGTGAAGAAACAGGAGAAGGATGAGAAGCTTGATGGAGATGCAGCTATGAACAAATTTTTCAGCGACATATACTCGAGTGCAGATGAAGACATGAGGCGGGCAATGAACAAATCATTTGCAGAGTCGAATGGGACGGTACTGTCGACAAACTGGAAAGAAGTTGGGACTAAGAAAGTGGAGAGCACTCCACCAGATGGCATGGAGCTCAAGAAGTGGGAGTATTGA

Protein Analysis

358

Amino Acids

39.76

Weight (kDa)

5.03

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 161 - 236 5e-11 CS domain
SGS PF05002 276 - 356 2e-34 SGS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
AasI GACNNNNNNGTC 1 cut(s) 991
Acc36I ACCTGC 1 cut(s) 472
AccB7I CCANNNNNTGG 1 cut(s) 1046
AccI GTMKAC 2 cut(s) 680, 995
AciI CCGC 3 cut(s) 108, 512, 949
AclI AACGTT 1 cut(s) 203
AclWI GGATC 3 cut(s) 89, 102, 688
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 905
AcuI CTGAAG 2 cut(s) 180, 870
AfaI GTAC 4 cut(s) 262, 540, 806, 990
AfeI AGCGCT 1 cut(s) 786
AfiI CCNNNNNNNGG 2 cut(s) 283, 1046
AgsI TTSAA 3 cut(s) 402, 671, 737
AjnI CCWGG 2 cut(s) 276, 722
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
Alw21I GWGCWC 3 cut(s) 130, 1037, 1059
Alw26I GTCTC 2 cut(s) 781, 790
AlwI GGATC 3 cut(s) 89, 102, 688
AlwNI CAGNNNCTG 2 cut(s) 464, 580
Ama87I CYCGRG 1 cut(s) 925
Aor51HI AGCGCT 1 cut(s) 786
AoxI GGCC 3 cut(s) 3, 132, 726
ApeKI GCWGC 3 cut(s) 272, 458, 893
ApoI RAATTY 1 cut(s) 905
ArsI GACNNNNNNTTYG 2 cut(s) 759, 791
Asp700I GAANNNNTTC 1 cut(s) 36
AspLEI GCGC 2 cut(s) 107, 787
AspS9I GGNCC 1 cut(s) 726
AsuHPI GGTGA 3 cut(s) 529, 581, 712
AvaI CYCGRG 1 cut(s) 925
AxyI CCTNAGG 1 cut(s) 543
BaeGI GKGCMC 1 cut(s) 233
BaeI ACNNNNGTAYC 2 cut(s) 788, 821
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 1059
BauI CACGAG 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 945
Bbv12I GWGCWC 3 cut(s) 130, 1037, 1059
BbvI GCAGC 3 cut(s) 284, 470, 905
BccI CCATC 3 cut(s) 817, 878, 1040
BciT130I CCWGG 2 cut(s) 278, 724
BcoDI GTCTC 2 cut(s) 781, 790
BfaI CTAG 3 cut(s) 41, 248, 419
BfmI CTRYAG 1 cut(s) 456
BfoI RGCGCY 1 cut(s) 788
BfuAI ACCTGC 1 cut(s) 472
BisI GCNGC 4 cut(s) 108, 273, 459, 894
BlsI GCNGC 4 cut(s) 109, 274, 460, 895
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 278, 724
BmeT110I CYCGRG 1 cut(s) 925
BmgT120I GGNCC 1 cut(s) 726
BmiI GGNNCC 2 cut(s) 96, 198
BmrFI CCNGG 2 cut(s) 278, 724
BmrI ACTGGG 1 cut(s) 841
BmsI GCATC 4 cut(s) 163, 372, 424, 880
BmuI ACTGGG 1 cut(s) 841
BpiI GAAGAC 1 cut(s) 945
BpmI CTGGAG 2 cut(s) 608, 624
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 1043
Bsa29I ATCGAT 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 790
BsaJI CCNNGG 3 cut(s) 6, 276, 723
BsaXI ACNNNNNCTCC 6 cut(s) 59, 89, 188, 218, 279, 309
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 1046
Bse1I ACTGG 3 cut(s) 800, 836, 1007
Bse21I CCTNAGG 1 cut(s) 543
Bse3DI GCAATG 1 cut(s) 960
BseBI CCWGG 2 cut(s) 278, 724
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 3 cut(s) 6, 276, 723
BseGI GGATG 1 cut(s) 877
BseLI CCNNNNNNNGG 2 cut(s) 283, 1046
BseMI GCAATG 1 cut(s) 960
BseMII CTCAG 3 cut(s) 143, 235, 572
BseNI ACTGG 3 cut(s) 800, 836, 1007
BseRI GAGGAG 1 cut(s) 429
BseSI GKGCMC 1 cut(s) 233
BseXI GCAGC 3 cut(s) 284, 470, 905
BsgI GTGCAG 2 cut(s) 682, 951
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 3 cut(s) 5, 134, 728
BshVI ATCGAT 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 3 cut(s) 130, 1037, 1059
BsiHKCI CYCGRG 1 cut(s) 925
BslFI GGGAC 3 cut(s) 848, 997, 1030
BslI CCNNNNNNNGG 2 cut(s) 283, 1046
BsmAI GTCTC 2 cut(s) 781, 790
BsmFI GGGAC 3 cut(s) 848, 997, 1030
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 3 cut(s) 5, 134, 728
Bso31I GGTCTC 1 cut(s) 790
BsoBI CYCGRG 1 cut(s) 925
Bsp1286I GDGCHC 4 cut(s) 130, 233, 1037, 1059
Bsp143I GATC 4 cut(s) 94, 121, 340, 693
BspACI CCGC 3 cut(s) 108, 512, 949
BspANI GGCC 3 cut(s) 5, 134, 728
BspCNI CTCAG 3 cut(s) 142, 234, 573
BspDI ATCGAT 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 96, 198
BspMAI CTGCAG 1 cut(s) 460
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 3 cut(s) 89, 102, 688
BspTNI GGTCTC 1 cut(s) 790
BsrDI GCAATG 1 cut(s) 960
BsrI ACTGG 3 cut(s) 800, 836, 1007
BssECI CCNNGG 3 cut(s) 6, 276, 723
BssMI GATC 4 cut(s) 94, 121, 340, 693
BssSI CACGAG 1 cut(s) 485
BssT1I CCWWGG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 485
Bst2UI CCWGG 2 cut(s) 278, 724
Bst4CI ACNGT 3 cut(s) 559, 988, 993
Bst6I CTCTTC 1 cut(s) 354
BstAPI GCANNNNNTGC 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 822, 951
BstDEI CTNAG 6 cut(s) 129, 221, 543, 581, 816, 1020
BstENI CCTNNNNNAGG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 877
BstH2I RGCGCY 1 cut(s) 788
BstHHI GCGC 2 cut(s) 107, 787
BstKTI GATC 4 cut(s) 97, 124, 343, 696
BstMAI GTCTC 2 cut(s) 781, 790
BstMBI GATC 4 cut(s) 94, 121, 340, 693
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 9 cut(s) 23, 32, 116, 125, 182, 272, 296, 428, 464
BstNI CCWGG 2 cut(s) 278, 724
BstSCI CCNGG 2 cut(s) 276, 722
BstSFI CTRYAG 1 cut(s) 456
BstSLI GKGCMC 1 cut(s) 233
BstV1I GCAGC 3 cut(s) 284, 470, 905
BstV2I GAAGAC 1 cut(s) 945
BstX2I RGATCY 2 cut(s) 94, 693
BstXI CCANNNNNNTGG 2 cut(s) 91, 193
BstYI RGATCY 2 cut(s) 94, 693
Bsu15I ATCGAT 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 543
BsuRI GGCC 3 cut(s) 5, 134, 728
BsuTUI ATCGAT 1 cut(s) 147
BtsCI GGATG 1 cut(s) 877
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 3 cut(s) 156, 231, 807
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 822, 951
CaiI CAGNNNCTG 2 cut(s) 464, 580
CfoI GCGC 2 cut(s) 107, 787
Cfr13I GGNCC 1 cut(s) 726
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 4 cut(s) 261, 539, 805, 989
CspCI CAANNNNNGTGG 2 cut(s) 375, 410
CviAII CATG 2 cut(s) 943, 1051
CviQI GTAC 4 cut(s) 261, 539, 805, 989
DdeI CTNAG 6 cut(s) 129, 221, 543, 581, 816, 1020
DpnI GATC 4 cut(s) 96, 123, 342, 695
DpnII GATC 4 cut(s) 94, 121, 340, 693
DrdI GACNNNNNNGTC 1 cut(s) 991
DseDI GACNNNNNNGTC 1 cut(s) 991
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 1057
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 1059
Eco31I GGTCTC 1 cut(s) 790
Eco47III AGCGCT 1 cut(s) 786
Eco53kI GAGCTC 1 cut(s) 1057
Eco57I CTGAAG 2 cut(s) 180, 870
Eco81I CCTNAGG 1 cut(s) 543
Eco88I CYCGRG 1 cut(s) 925
EcoICRI GAGCTC 1 cut(s) 1057
EcoNI CCTNNNNNAGG 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 276, 722
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 1059
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 946, 1054
FaiI YATR 9 cut(s) 73, 242, 258, 741, 899, 920, 922, 944, 1052
FaqI GGGAC 3 cut(s) 848, 997, 1030
FatI CATG 2 cut(s) 942, 1050
FauI CCCGC 1 cut(s) 942
FblI GTMKAC 2 cut(s) 680, 995
Fnu4HI GCNGC 4 cut(s) 108, 273, 459, 894
FokI GGATG 1 cut(s) 884
FriOI GRGCYC 1 cut(s) 1059
Fsp4HI GCNGC 4 cut(s) 108, 273, 459, 894
FspBI CTAG 3 cut(s) 41, 248, 419
GlaI GCGC 2 cut(s) 106, 786
GluI GCNGC 4 cut(s) 108, 273, 459, 894
GsuI CTGGAG 2 cut(s) 608, 624
HaeII RGCGCY 1 cut(s) 788
HaeIII GGCC 3 cut(s) 5, 134, 728
HhaI GCGC 2 cut(s) 107, 787
Hin1II CATG 2 cut(s) 946, 1054
Hin6I GCGC 2 cut(s) 105, 785
HinP1I GCGC 2 cut(s) 105, 785
HincII GTYRAC 3 cut(s) 67, 681, 996
HindII GTYRAC 3 cut(s) 67, 681, 996
HindIII AAGCTT 3 cut(s) 33, 612, 878
HinfI GANTC 2 cut(s) 577, 974
HphI GGTGA 3 cut(s) 529, 581, 712
Hpy166II GTNNAC 4 cut(s) 67, 681, 805, 996
Hpy188I TCNGA 2 cut(s) 224, 582
Hpy188III TCNNGA 3 cut(s) 41, 640, 1060
Hpy8I GTNNAC 4 cut(s) 67, 681, 805, 996
HpyAV CCTTC 3 cut(s) 121, 408, 862
HpyCH4III ACNGT 3 cut(s) 559, 988, 993
HpyCH4IV ACGT 2 cut(s) 203, 552
HpyCH4V TGCA 7 cut(s) 299, 353, 458, 663, 893, 932, 971
HpyF10VI GCNNNNNNNGC 9 cut(s) 23, 32, 116, 125, 182, 272, 296, 428, 464
HpyF3I CTNAG 6 cut(s) 129, 221, 543, 581, 816, 1020
HpySE526I ACGT 2 cut(s) 203, 552
Hsp92II CATG 2 cut(s) 946, 1054
HspAI GCGC 2 cut(s) 105, 785
Kzo9I GATC 4 cut(s) 94, 121, 340, 693
LmnI GCTCC 4 cut(s) 196, 287, 442, 1054
Lsp1109I GCAGC 3 cut(s) 284, 470, 905
LweI GCATC 4 cut(s) 163, 372, 424, 880
MaeI CTAG 3 cut(s) 41, 248, 419
MaeII ACGT 2 cut(s) 203, 552
MaeIII GTNAC 2 cut(s) 517, 553
MalI GATC 4 cut(s) 96, 123, 342, 695
MboI GATC 4 cut(s) 94, 121, 340, 693
MfeI CAATTG 1 cut(s) 100
MflI RGATCY 2 cut(s) 94, 693
MhlI GDGCHC 4 cut(s) 130, 233, 1037, 1059
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 11, 100, 450, 522, 905
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 983
MmeI TCCRAC 2 cut(s) 174, 822
MnlI CCTC 4 cut(s) 450, 601, 739, 939
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 36
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 318
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 278, 724
MunI CAATTG 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 341
MvaI CCWGG 2 cut(s) 278, 724
MwoI GCNNNNNNNGC 9 cut(s) 23, 32, 116, 125, 182, 272, 296, 428, 464
NdeII GATC 4 cut(s) 94, 121, 340, 693
NlaIII CATG 2 cut(s) 946, 1054
NlaIV GGNNCC 2 cut(s) 96, 198
NmeAIII GCCGAG 1 cut(s) 654
NmuCI GTSAC 1 cut(s) 517
PaeR7I CTCGAG 1 cut(s) 925
PaqCI CACCTGC 1 cut(s) 472
PcsI WCGNNNNNNNCGW 2 cut(s) 558, 992
PctI GAATGC 1 cut(s) 341
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 577
PflMI CCANNNNNTGG 1 cut(s) 1046
PkrI GCNGC 4 cut(s) 109, 274, 460, 895
Ple19I CGATCG 1 cut(s) 124
PleI GAGTC 1 cut(s) 982
PpsI GAGTC 1 cut(s) 982
Psp124BI GAGCTC 1 cut(s) 1059
Psp1406I AACGTT 1 cut(s) 203
Psp6I CCWGG 2 cut(s) 276, 722
PspGI CCWGG 2 cut(s) 276, 722
PspN4I GGNNCC 2 cut(s) 96, 198
PspPI GGNCC 1 cut(s) 726
PspXI VCTCGAGB 1 cut(s) 925
PstI CTGCAG 1 cut(s) 460
PstNI CAGNNNCTG 2 cut(s) 464, 580
PsuI RGATCY 2 cut(s) 94, 693
PvuI CGATCG 1 cut(s) 124
RsaI GTAC 4 cut(s) 262, 540, 806, 990
RsaNI GTAC 4 cut(s) 261, 539, 805, 989
SacI GAGCTC 1 cut(s) 1059
SalI GTCGAC 2 cut(s) 679, 994
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 4 cut(s) 108, 273, 459, 894
Sau3AI GATC 4 cut(s) 94, 121, 340, 693
Sau96I GGNCC 1 cut(s) 726
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 1 cut(s) 983
ScrFI CCNGG 2 cut(s) 278, 724
SduI GDGCHC 4 cut(s) 130, 233, 1037, 1059
SfaNI GCATC 4 cut(s) 163, 372, 424, 880
SfcI CTRYAG 1 cut(s) 456
Sfr274I CTCGAG 1 cut(s) 925
SlaI CTCGAG 1 cut(s) 925
SmlI CTYRAG 2 cut(s) 925, 1058
SmoI CTYRAG 2 cut(s) 925, 1058
Sse9I AATT 5 cut(s) 11, 100, 450, 522, 905
SsiI CCGC 3 cut(s) 108, 512, 949
SspMI CTAG 3 cut(s) 41, 248, 419
SstI GAGCTC 1 cut(s) 1059
StyD4I CCNGG 2 cut(s) 276, 722
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 3 cut(s) 559, 988, 993
TaiI ACGT 2 cut(s) 206, 555
TaqI TCGA 7 cut(s) 54, 147, 561, 680, 926, 977, 995
TasI AATT 5 cut(s) 11, 100, 450, 522, 905
TatI WGTACW 1 cut(s) 260
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 3 cut(s) 163, 238, 807
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 3 cut(s) 272, 458, 893
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 6 cut(s) 257, 321, 348, 914, 951, 971
TspGWI ACGGA 2 cut(s) 440, 686
TspRI CASTG 3 cut(s) 163, 238, 807
Van91I CCANNNNNTGG 1 cut(s) 1046
XagI CCTNNNNNAGG 1 cut(s) 281
XapI RAATTY 1 cut(s) 905
XbaI TCTAGA 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 828
XhoI CTCGAG 1 cut(s) 925
XmiI GTMKAC 2 cut(s) 680, 995
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 3 cut(s) 41, 248, 419
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.