Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8382307.1

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

139 .. 402

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8382307.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgggttattcgatctgggaaatagcgaaggccttcatcgacgaccactttgagctcgccgttgacctttacacccatgccattgccgtcgaccccaacaaatttgagttctactccgaccgcgctcaggccaacatcaaatccaacaatctcaccggtaacaaccccctctctcttgcaatttctgacgccggttcttcgtcgtcttcttgtttcgtttctgagaccttgaaggaattaaactgcattttttgtgcgaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

87

Amino Acids

9.56

Weight (kDa)

4.49

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	123
AciI	CCGC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	218
AoxI	GGCC	2 cut(s)	30, 129
ApoI	RAATTY	1 cut(s)	101
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AsiGI	ACCGGT	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	57
BceAI	ACGGC	2 cut(s)	44, 71
BcoDI	GTCTC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	198
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu10I	CCTNAGC	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	2 cut(s)	155, 191
Bse3DI	GCAATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	140, 213
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	32, 131
BshTI	ACCGGT	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	156, 192
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	32, 131
Bso31I	GGTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	32, 131
BspCNI	CTCAG	2 cut(s)	139, 214
BspFNI	CGCG	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	81
BsrFI	RCCGGY	2 cut(s)	155, 191
BssAI	RCCGGY	2 cut(s)	155, 191
BssMI	GATC	1 cut(s)	12
BssNI	GRCGYC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	126, 222
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	12
BstMCI	CGRYCG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	32, 131
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	2 cut(s)	155, 191
CseI	GACGC	1 cut(s)	197
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	3 cut(s)	32, 55, 131
CviKI_1	RGCY	3 cut(s)	32, 55, 131
DdeI	CTNAG	2 cut(s)	126, 222
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	55
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	1 cut(s)	80
FaiI	YATR	1 cut(s)	78
FatI	CATG	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	32, 131
HapII	CCGG	2 cut(s)	156, 192
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	2 cut(s)	64, 91
HindII	GTYRAC	2 cut(s)	64, 91
HpaII	CCGG	2 cut(s)	156, 192
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	2 cut(s)	64, 91
Hpy188I	TCNGA	3 cut(s)	118, 187, 223
Hpy8I	GTNNAC	2 cut(s)	64, 91
Hpy99I	CGWCG	3 cut(s)	44, 92, 205
HpyAV	CCTTC	3 cut(s)	22, 43, 226
HpyCH4V	TGCA	2 cut(s)	179, 246
HpyF3I	CTNAG	2 cut(s)	126, 222
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	3 cut(s)	113, 169, 205
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	2 cut(s)	189, 198
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	3 cut(s)	101, 180, 236
MmeI	TCCRAC	2 cut(s)	141, 168
MnlI	CCTC	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	1 cut(s)	239
MspI	CCGG	2 cut(s)	156, 192
MvnI	CGCG	1 cut(s)	123
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	1 cut(s)	80
PceI	AGGCCT	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	32
PinAI	ACCGGT	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	239
Sau3AI	GATC	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	3 cut(s)	57, 69, 230
Sse9I	AATT	3 cut(s)	101, 180, 236
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	121
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	32
TaqI	TCGA	3 cut(s)	11, 39, 90
TasI	AATT	3 cut(s)	101, 180, 236
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	25
XapI	RAATTY	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.