Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003092.1

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Forward (+)

54011 .. 55624

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003092.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgggttattcaatttgggaaatagagaaggccttcatcgacagccactccgagctaaccactgatctctacacccaggccatcgcagtcgaccccaacaactccgagctctacttcgatcgcgctcatgccaacatcaaatccaacaatctcaccggtctggtcaacgcccatcagcatcagtcaaggcctggtcaatttcgatcaaatgctagtcaacaatttataggactggtcaacgctggagatcagcgcaccagcggctccgcctgccagcccagcggtaacccagcacctccgctgaccatcatcaccgccggctatcctctgctggccaagctccaaccagcgccaaggcatgcttctcagcgtcaatcaccgccagggacaccgctagggagtacctcggtcagcggcagcgccaaacactgtcagcggaagtgcaaaattcctcggccgagctctgtcagcggcacccccgctgactatcatcaccgccggctctccggctctcttccgatcaacttcatcagcggcaagttctgccgctcaactccatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

187

Amino Acids

20.13

Weight (kDa)

9.65

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	473
AccBSI	CCGCTC	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	123
AcoI	YGGCCR	2 cut(s)	333, 455
AcsI	RAATTY	1 cut(s)	447
AfaI	GTAC	1 cut(s)	403
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	12
AjnI	CCWGG	3 cut(s)	75, 190, 382
AjuI	GAANNNNNNNTTGG	2 cut(s)	346, 378
AluBI	AGCT	4 cut(s)	55, 109, 340, 462
AluI	AGCT	4 cut(s)	55, 109, 340, 462
Alw21I	GWGCWC	2 cut(s)	111, 464
AoxI	GGCC	5 cut(s)	30, 78, 188, 333, 455
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	1 cut(s)	447
AsiGI	ACCGGT	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	4 cut(s)	125, 255, 352, 422
AsuHPI	GGTGA	4 cut(s)	145, 304, 369, 485
BalI	TGGCCA	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	473
BanII	GRGCYC	2 cut(s)	111, 464
Bbv12I	GWGCWC	2 cut(s)	111, 464
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	3 cut(s)	89, 180, 314
BciT130I	CCWGG	3 cut(s)	77, 192, 384
BfaI	CTAG	2 cut(s)	213, 395
BfoI	RGCGCY	2 cut(s)	353, 423
BisI	GCNGC	6 cut(s)	262, 415, 418, 472, 535, 547
BlsI	GCNGC	6 cut(s)	263, 416, 419, 473, 536, 548
Bme1390I	CCNGG	3 cut(s)	77, 192, 384
BmiI	GGNNCC	2 cut(s)	265, 475
BmrFI	CCNGG	3 cut(s)	77, 192, 384
BmsI	GCATC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	264
BsaJI	CCNNGG	5 cut(s)	75, 353, 383, 405, 452
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse118I	RCCGGY	3 cut(s)	155, 317, 498
Bse1I	ACTGG	1 cut(s)	237
BseBI	CCWGG	3 cut(s)	77, 192, 384
BseDI	CCNNGG	5 cut(s)	75, 353, 383, 405, 452
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	1 cut(s)	237
BseX3I	CGGCCG	1 cut(s)	455
BseXI	GCAGC	1 cut(s)	429
BseYI	CCCAGC	2 cut(s)	278, 289
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	2 cut(s)	121, 458
BshFI	GGCC	5 cut(s)	32, 80, 190, 335, 457
BshNI	GGYRCC	1 cut(s)	473
BshTI	ACCGGT	1 cut(s)	155
BsiEI	CGRYCG	2 cut(s)	121, 458
BsiHKAI	GWGCWC	2 cut(s)	111, 464
BsiSI	CCGG	4 cut(s)	156, 318, 499, 507
BslFI	GGGAC	1 cut(s)	400
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	5 cut(s)	32, 80, 190, 335, 457
Bsp1286I	GDGCHC	2 cut(s)	111, 464
Bsp143I	GATC	5 cut(s)	64, 118, 203, 247, 519
BspANI	GGCC	5 cut(s)	32, 80, 190, 335, 457
BspCNI	CTCAG	1 cut(s)	379
BspFNI	CGCG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	560
BspLI	GGNNCC	2 cut(s)	265, 475
BspT107I	GGYRCC	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	549
BsrFI	RCCGGY	3 cut(s)	155, 317, 498
BsrI	ACTGG	1 cut(s)	237
BssAI	RCCGGY	3 cut(s)	155, 317, 498
BssECI	CCNNGG	5 cut(s)	75, 353, 383, 405, 452
BssMI	GATC	5 cut(s)	64, 118, 203, 247, 519
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	3 cut(s)	77, 192, 384
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	519
BstAPI	GCANNNNNTGC	1 cut(s)	543
BstC8I	GCNNGC	6 cut(s)	271, 275, 319, 333, 360, 500
BstDEI	CTNAG	1 cut(s)	366
BstEII	GGTNACC	1 cut(s)	284
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	2 cut(s)	353, 423
BstHHI	GCGC	4 cut(s)	125, 255, 352, 422
BstKTI	GATC	5 cut(s)	67, 121, 206, 250, 522
BstMBI	GATC	5 cut(s)	64, 118, 203, 247, 519
BstMCI	CGRYCG	2 cut(s)	121, 458
BstMWI	GCNNNNNNNGC	6 cut(s)	261, 270, 279, 337, 468, 543
BstNI	CCWGG	3 cut(s)	77, 192, 384
BstNSI	RCATGY	1 cut(s)	362
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	3 cut(s)	75, 190, 382
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	429
BstZI	CGGCCG	1 cut(s)	455
BsuRI	GGCC	5 cut(s)	32, 80, 190, 335, 457
BtgZI	GCGATG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	60, 427
Cac8I	GCNNGC	6 cut(s)	271, 275, 319, 333, 360, 500
CciI	TCATGA	1 cut(s)	560
CfoI	GCGC	4 cut(s)	125, 255, 352, 422
Cfr10I	RCCGGY	3 cut(s)	155, 317, 498
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	402
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	3 cut(s)	128, 359, 561
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	5 cut(s)	66, 120, 205, 249, 521
DpnII	GATC	5 cut(s)	64, 118, 203, 247, 519
EaeI	YGGCCR	2 cut(s)	333, 455
EagI	CGGCCG	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
EciI	GGCGGA	1 cut(s)	256
Ecl136II	GAGCTC	2 cut(s)	109, 462
EclXI	CGGCCG	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	353
Eco147I	AGGCCT	2 cut(s)	32, 190
Eco24I	GRGCYC	2 cut(s)	111, 464
Eco52I	CGGCCG	1 cut(s)	455
Eco53kI	GAGCTC	2 cut(s)	109, 462
Eco91I	GGTNACC	1 cut(s)	284
EcoICRI	GAGCTC	2 cut(s)	109, 462
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	3 cut(s)	75, 190, 382
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	2 cut(s)	111, 464
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	3 cut(s)	131, 362, 564
FaiI	YATR	4 cut(s)	129, 227, 360, 562
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	3 cut(s)	127, 358, 560
FauI	CCCGC	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	6 cut(s)	262, 415, 418, 472, 535, 547
FriOI	GRGCYC	2 cut(s)	111, 464
Fsp4HI	GCNGC	6 cut(s)	262, 415, 418, 472, 535, 547
FspBI	CTAG	2 cut(s)	213, 395
GlaI	GCGC	4 cut(s)	124, 254, 351, 421
GluI	GCNGC	6 cut(s)	262, 415, 418, 472, 535, 547
GsaI	CCCAGC	2 cut(s)	282, 293
GsuI	CTGGAG	1 cut(s)	264
HaeII	RGCGCY	2 cut(s)	353, 423
HaeIII	GGCC	5 cut(s)	32, 80, 190, 335, 457
HapII	CCGG	4 cut(s)	156, 318, 499, 507
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	4 cut(s)	125, 255, 352, 422
Hin1II	CATG	3 cut(s)	131, 362, 564
Hin6I	GCGC	4 cut(s)	123, 253, 350, 420
HinP1I	GCGC	4 cut(s)	123, 253, 350, 420
HincII	GTYRAC	4 cut(s)	91, 166, 218, 238
HindII	GTYRAC	4 cut(s)	91, 166, 218, 238
HpaII	CCGG	4 cut(s)	156, 318, 499, 507
HphI	GGTGA	4 cut(s)	145, 304, 369, 485
Hpy166II	GTNNAC	4 cut(s)	91, 166, 218, 238
Hpy188I	TCNGA	3 cut(s)	52, 106, 519
Hpy188III	TCNNGA	1 cut(s)	561
Hpy8I	GTNNAC	4 cut(s)	91, 166, 218, 238
HpyAV	CCTTC	2 cut(s)	22, 43
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	1 cut(s)	444
HpyF10VI	GCNNNNNNNGC	6 cut(s)	261, 270, 279, 337, 468, 543
HpyF3I	CTNAG	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	131, 362, 564
HspAI	GCGC	4 cut(s)	123, 253, 350, 420
KroI	GCCGGC	2 cut(s)	317, 498
KroNI	GCCGGC	2 cut(s)	319, 500
Kzo9I	GATC	5 cut(s)	64, 118, 203, 247, 519
LmnI	GCTCC	2 cut(s)	269, 345
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	213, 395
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	5 cut(s)	66, 120, 205, 249, 521
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	5 cut(s)	64, 118, 203, 247, 519
MboII	GAAGA	1 cut(s)	506
MhlI	GDGCHC	2 cut(s)	111, 464
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	4 cut(s)	12, 197, 221, 447
MluNI	TGGCCA	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	168, 367
MnlI	CCTC	4 cut(s)	306, 336, 415, 462
Mox20I	TGGCCA	1 cut(s)	335
MroNI	GCCGGC	2 cut(s)	317, 498
MroXI	GAANNNNTTC	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	8 cut(s)	261, 282, 301, 414, 436, 471, 482, 534
MspI	CCGG	4 cut(s)	156, 318, 499, 507
MspR9I	CCNGG	3 cut(s)	77, 192, 384
MvaI	CCWGG	3 cut(s)	77, 192, 384
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	6 cut(s)	261, 270, 279, 337, 468, 543
NaeI	GCCGGC	2 cut(s)	319, 500
NdeII	GATC	5 cut(s)	64, 118, 203, 247, 519
NgoMIV	GCCGGC	2 cut(s)	317, 498
NlaIII	CATG	3 cut(s)	131, 362, 564
NlaIV	GGNNCC	2 cut(s)	265, 475
NmeAIII	GCCGAG	2 cut(s)	433, 483
NspI	RCATGY	1 cut(s)	362
PaeI	GCATGC	1 cut(s)	362
PagI	TCATGA	1 cut(s)	560
PceI	AGGCCT	2 cut(s)	32, 190
PdiI	GCCGGC	2 cut(s)	319, 500
PdmI	GAANNNNTTC	1 cut(s)	32
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	6 cut(s)	263, 416, 419, 473, 536, 548
Ple19I	CGATCG	1 cut(s)	121
Psp124BI	GAGCTC	2 cut(s)	111, 464
Psp6I	CCWGG	3 cut(s)	75, 190, 382
PspEI	GGTNACC	1 cut(s)	284
PspFI	CCCAGC	2 cut(s)	278, 289
PspGI	CCWGG	3 cut(s)	75, 190, 382
PspN4I	GGNNCC	2 cut(s)	265, 475
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SacI	GAGCTC	2 cut(s)	111, 464
SalI	GTCGAC	1 cut(s)	89
SatI	GCNGC	6 cut(s)	262, 415, 418, 472, 535, 547
Sau3AI	GATC	5 cut(s)	64, 118, 203, 247, 519
ScrFI	CCNGG	3 cut(s)	77, 192, 384
SduI	GDGCHC	2 cut(s)	111, 464
SetI	ASST	6 cut(s)	57, 111, 298, 342, 407, 464
SfaNI	GCATC	1 cut(s)	187
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	4 cut(s)	12, 197, 221, 447
SseBI	AGGCCT	2 cut(s)	32, 190
SspMI	CTAG	2 cut(s)	213, 395
SstI	GAGCTC	2 cut(s)	111, 464
StuI	AGGCCT	2 cut(s)	32, 190
StyD4I	CCNGG	3 cut(s)	75, 190, 382
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	431
TaqI	TCGA	4 cut(s)	39, 90, 117, 202
TaqII	GACCGA	1 cut(s)	397
TasI	AATT	4 cut(s)	12, 197, 221, 447
TauI	GCSGC	5 cut(s)	264, 417, 474, 537, 549
TscAI	CASTG	2 cut(s)	67, 434
TseI	GCWGC	1 cut(s)	417
TspDTI	ATGAA	2 cut(s)	25, 517
TspRI	CASTG	2 cut(s)	67, 434
XapI	RAATTY	1 cut(s)	447
XceI	RCATGY	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	213, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.