MD01G1210400.v1.1

Protein SGT1 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
30422742 .. 30426145
3404 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1210400.v1.1.491

Sequence Viewer

Length: 1083 bp
ATGGCTTCCGATCCCGAACAGCGTGCCAAGGAGGCGTTCATGGACGACCACTTCGAGTTGGCCGTCGACCTCTACACCCAGGCCATCGCTCTCAACCCCCAGAGCGCCGAGCTCTACTCCGACCGCGCCCAGGCCAACATCAAAGCCGGCAATCTCACTGAGGCTGTTGCGGATGCGAACAAGGCGATTGAGTTCGACCCGTCATTGTACAAAGCGTATTTTCGAAAAGGAATTGCCTGCATCAAGCTCGAGGAATATCAGACTGCAAAGGCGGCCCTGGAAACCGGTGCTCCTTTGGCCCCGCAGGAGACAAGATTTGCTAGTTTGATAAAAGAGTGTGATGAGAAAATTGCAGAGGAAACTATTGTTCTACCAACACCTCCAGTGGAGAAAGACATTACAGAGAATGTTATACCTGAAAAAGATGTTGAGCCTGTGAGTCAACCTTCCAATCAGGTGACCGTAGCAACTGTCAAACCAAAATACAGGCATGAATTCTACCAGAAGCCAGAAGAAGGGGTTGTGACTATATTCGCCAAGGGCATACCGGCCAAAGATGTTCATGTTGACTTTGGTGAACAAATACTAAGTGTTAGCATCGATGTTGCTGGTGAAGATACATATCATTTTCAACCTCGCTTATTTGGAAAGATAATACCTGAAAAATGCAGGTTCGACGTTCTCTCCACCAAAGTTGAAATTCGCCTGGCTAAAGCTGAACCGATACAGTGGGCATCTCTTGAATTCAGCAAGGACAGCCTTGTTCCATTTAGGGGCAGTGGCCCAGTTGTTGGAGCGCCAAGGCCATCCTACCCATCCTCAAAACCAAAAAGGGACTGGGATAAGCTGGAGGCTCAAGTGAAGAAGGAGGAAAAAGAAGAGAAGCTTGATGGTGATGCAGCTCTGAACAAATTCTTCCAGGACATATACAAGGATGCTGATGAGGACACAAGAAGGGCGATGAGAAAATCTTTTGTGGAGTCAAACGGGACAGTGCTTTCGACAAACTGGAAAGAAGTGGGAAACAAAAAGGTTGAGGGAAGTGCTCCCGACGGCATGGAGATGAAGAAATGGGAGTTCTAG

Protein Analysis

361

Amino Acids

40.35

Weight (kDa)

5.08

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 15 - 68 3.1e-06 Tetratricopeptide repeat
CS PF04969 163 - 238 1e-10 CS domain
SGS PF05002 278 - 358 1e-35 SGS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 660
AccB7I CCANNNNNTGG 1 cut(s) 791
AccI GTMKAC 1 cut(s) 66
AccII CGCG 1 cut(s) 126
AciI CCGC 4 cut(s) 124, 170, 272, 302
AclWI GGATC 1 cut(s) 5
AcoI YGGCCR 2 cut(s) 60, 549
AcsI RAATTY 4 cut(s) 494, 699, 743, 911
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 4 cut(s) 130, 515, 773, 791
AgeI ACCGGT 1 cut(s) 284
AgsI TTSAA 3 cut(s) 632, 698, 743
AjnI CCWGG 5 cut(s) 78, 129, 276, 705, 918
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 6 cut(s) 112, 247, 716, 847, 886, 902
AluI AGCT 6 cut(s) 112, 247, 716, 847, 886, 902
Alw21I GWGCWC 3 cut(s) 114, 292, 1048
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 5
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 8 cut(s) 60, 81, 132, 273, 297, 549, 781, 803
ApeKI GCWGC 1 cut(s) 899
ApoI RAATTY 4 cut(s) 494, 699, 743, 911
ArsI GACNNNNNNTTYG 4 cut(s) 35, 67, 982, 1014
AsiGI ACCGGT 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 911
AspLEI GCGC 3 cut(s) 107, 128, 799
AspS9I GGNCC 3 cut(s) 274, 298, 782
AsuHPI GGTGA 4 cut(s) 469, 587, 623, 905
AsuII TTCGAA 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 248
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 3 cut(s) 114, 292, 1048
BbvI GCAGC 1 cut(s) 911
BccI CCATC 4 cut(s) 92, 814, 823, 884
BceAI ACGGC 2 cut(s) 47, 1069
BcgI CGANNNNNNTGC 4 cut(s) 5, 39, 229, 263
BciT130I CCWGG 5 cut(s) 80, 131, 278, 707, 920
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 2 cut(s) 321, 1081
BfoI RGCGCY 2 cut(s) 108, 800
BfuAI ACCTGC 1 cut(s) 660
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 2 cut(s) 273, 900
BlsI GCNGC 2 cut(s) 274, 901
Bme1390I CCNGG 5 cut(s) 80, 131, 278, 707, 920
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 3 cut(s) 274, 298, 782
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 5 cut(s) 80, 131, 278, 707, 920
BmrI ACTGGG 2 cut(s) 779, 847
BmsI GCATC 6 cut(s) 163, 249, 606, 743, 886, 925
BmuI ACTGGG 2 cut(s) 779, 847
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 2 cut(s) 366, 869
Bpu14I TTCGAA 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 840
Bsa29I ATCGAT 1 cut(s) 600
BsaBI GATNNNNATC 1 cut(s) 621
BsaJI CCNNGG 6 cut(s) 27, 78, 129, 276, 537, 800
BsaWI WCCGGW 1 cut(s) 284
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 668, 698
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 515, 773, 791
Bse118I RCCGGY 3 cut(s) 146, 284, 547
Bse1I ACTGG 4 cut(s) 383, 785, 842, 1013
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 5 cut(s) 80, 131, 278, 707, 920
BseCI ATCGAT 1 cut(s) 600
BseDI CCNNGG 6 cut(s) 27, 78, 129, 276, 537, 800
BseGI GGATG 4 cut(s) 178, 806, 815, 940
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 4 cut(s) 130, 515, 773, 791
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 4 cut(s) 383, 785, 842, 1013
BseXI GCAGC 1 cut(s) 911
Bsh1236I CGCG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 8 cut(s) 62, 83, 134, 275, 299, 551, 783, 805
BshTI ACCGGT 1 cut(s) 284
BshVI ATCGAT 1 cut(s) 600
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 3 cut(s) 114, 292, 1048
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 3 cut(s) 147, 285, 548
BslFI GGGAC 2 cut(s) 848, 1003
BslI CCNNNNNNNGG 4 cut(s) 130, 515, 773, 791
BsmAI GTCTC 1 cut(s) 302
BsmFI GGGAC 2 cut(s) 848, 1003
BsnI GGCC 8 cut(s) 62, 83, 134, 275, 299, 551, 783, 805
BsoBI CYCGRG 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 223
Bsp1286I GDGCHC 3 cut(s) 114, 292, 1048
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 4 cut(s) 124, 170, 272, 302
BspANI GGCC 8 cut(s) 62, 83, 134, 275, 299, 551, 783, 805
BspCNI CTCAG 1 cut(s) 151
BspDI ATCGAT 1 cut(s) 600
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 300
BspMI ACCTGC 1 cut(s) 660
BspPI GGATC 1 cut(s) 5
BspT104I TTCGAA 1 cut(s) 223
BsrFI RCCGGY 3 cut(s) 146, 284, 547
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 4 cut(s) 383, 785, 842, 1013
BssAI RCCGGY 3 cut(s) 146, 284, 547
BssECI CCNNGG 6 cut(s) 27, 78, 129, 276, 537, 800
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 3 cut(s) 27, 537, 800
Bst2UI CCWGG 5 cut(s) 80, 131, 278, 707, 920
Bst4CI ACNGT 4 cut(s) 463, 472, 729, 994
Bst6I CTCTTC 1 cut(s) 873
BstAUI TGTACA 1 cut(s) 207
BstBI TTCGAA 1 cut(s) 223
BstC8I GCNNGC 3 cut(s) 24, 148, 238
BstDEI CTNAG 2 cut(s) 159, 587
BstEII GGTNACC 1 cut(s) 457
BstF5I GGATG 4 cut(s) 178, 806, 815, 940
BstFNI CGCG 1 cut(s) 126
BstH2I RGCGCY 2 cut(s) 108, 800
BstHHI GCGC 3 cut(s) 107, 128, 799
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 1 cut(s) 10
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 5 cut(s) 32, 182, 272, 296, 756
BstNI CCWGG 5 cut(s) 80, 131, 278, 707, 920
BstPI GGTNACC 1 cut(s) 457
BstSCI CCNGG 5 cut(s) 78, 129, 276, 705, 918
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 911
Bsu15I ATCGAT 1 cut(s) 600
BsuRI GGCC 8 cut(s) 62, 83, 134, 275, 299, 551, 783, 805
BsuTUI ATCGAT 1 cut(s) 600
BtgZI GCGATG 2 cut(s) 70, 974
BtsCI GGATG 4 cut(s) 178, 806, 815, 940
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 5 cut(s) 156, 390, 734, 784, 999
BveI ACCTGC 1 cut(s) 660
Cac8I GCNNGC 3 cut(s) 24, 148, 238
CfoI GCGC 3 cut(s) 107, 128, 799
Cfr10I RCCGGY 3 cut(s) 146, 284, 547
Cfr13I GGNCC 3 cut(s) 274, 298, 782
ClaI ATCGAT 1 cut(s) 600
Csp6I GTAC 1 cut(s) 208
CspAI ACCGGT 1 cut(s) 284
CspCI CAANNNNNGTGG 2 cut(s) 676, 711
CviAII CATG 4 cut(s) 40, 491, 563, 1057
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 159, 587
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EaeI YGGCCR 2 cut(s) 60, 549
Eam1104I CTCTTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 873
Ecl136II GAGCTC 1 cut(s) 112
Eco130I CCWWGG 3 cut(s) 27, 537, 800
Eco24I GRGCYC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 248
Eco91I GGTNACC 1 cut(s) 457
EcoICRI GAGCTC 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 457
EcoRI GAATTC 2 cut(s) 494, 743
EcoRII CCWGG 5 cut(s) 78, 129, 276, 705, 918
EcoT14I CCWWGG 3 cut(s) 27, 537, 800
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 3 cut(s) 27, 537, 800
FaeI CATG 4 cut(s) 43, 494, 566, 1060
FalI AAGNNNNNCTT 2 cut(s) 870, 902
FaqI GGGAC 2 cut(s) 848, 1003
FatI CATG 4 cut(s) 39, 490, 562, 1056
FauI CCCGC 1 cut(s) 309
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 273, 900
FokI GGATG 4 cut(s) 185, 793, 802, 947
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 273, 900
FspBI CTAG 2 cut(s) 321, 1081
GlaI GCGC 3 cut(s) 106, 127, 798
GluI GCNGC 2 cut(s) 273, 900
GsuI CTGGAG 2 cut(s) 366, 869
HaeII RGCGCY 2 cut(s) 108, 800
HaeIII GGCC 8 cut(s) 62, 83, 134, 275, 299, 551, 783, 805
HapII CCGG 3 cut(s) 147, 285, 548
HhaI GCGC 3 cut(s) 107, 128, 799
Hin1II CATG 4 cut(s) 43, 494, 566, 1060
Hin6I GCGC 3 cut(s) 105, 126, 797
HinP1I GCGC 3 cut(s) 105, 126, 797
HincII GTYRAC 3 cut(s) 67, 443, 568
HindII GTYRAC 3 cut(s) 67, 443, 568
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 2 cut(s) 439, 980
HpaII CCGG 3 cut(s) 147, 285, 548
HphI GGTGA 4 cut(s) 469, 587, 623, 905
Hpy166II GTNNAC 4 cut(s) 67, 443, 568, 578
Hpy188I TCNGA 4 cut(s) 10, 121, 261, 906
Hpy188III TCNNGA 3 cut(s) 14, 740, 1049
Hpy8I GTNNAC 4 cut(s) 67, 443, 568, 578
Hpy99I CGWCG 3 cut(s) 68, 680, 1055
HpyAV CCTTC 4 cut(s) 456, 509, 859, 948
HpyCH4III ACNGT 4 cut(s) 463, 472, 729, 994
HpyCH4IV ACGT 1 cut(s) 678
HpyCH4V TGCA 5 cut(s) 240, 266, 353, 669, 899
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 182, 272, 296, 756
HpyF3I CTNAG 2 cut(s) 159, 587
HpySE526I ACGT 1 cut(s) 678
Hsp92II CATG 4 cut(s) 43, 494, 566, 1060
HspAI GCGC 3 cut(s) 105, 126, 797
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 3 cut(s) 295, 794, 1051
Lsp1109I GCAGC 1 cut(s) 911
LweI GCATC 6 cut(s) 163, 249, 606, 743, 886, 925
MaeI CTAG 2 cut(s) 321, 1081
MaeII ACGT 1 cut(s) 678
MaeIII GTNAC 2 cut(s) 457, 523
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 6 cut(s) 524, 626, 874, 890, 907, 1078
MhlI GDGCHC 3 cut(s) 114, 292, 1048
MluCI AATT 6 cut(s) 231, 348, 494, 699, 743, 911
MlyI GAGTC 2 cut(s) 448, 989
MmeI TCCRAC 2 cut(s) 144, 772
MroNI GCCGGC 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 911
MslI CAYNNNNRTG 1 cut(s) 1061
MspI CCGG 3 cut(s) 147, 285, 548
MspR9I CCNGG 5 cut(s) 80, 131, 278, 707, 920
MvaI CCWGG 5 cut(s) 80, 131, 278, 707, 920
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 5 cut(s) 32, 182, 272, 296, 756
NaeI GCCGGC 1 cut(s) 148
NdeII GATC 1 cut(s) 10
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 4 cut(s) 43, 494, 566, 1060
NlaIV GGNNCC 1 cut(s) 300
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 2 cut(s) 457, 523
NspV TTCGAA 1 cut(s) 223
PaeR7I CTCGAG 1 cut(s) 248
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 60
PdiI GCCGGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 911
PflMI CCANNNNNTGG 1 cut(s) 791
PfoI TCCNGGA 1 cut(s) 918
PinAI ACCGGT 1 cut(s) 284
PkrI GCNGC 2 cut(s) 274, 901
PleI GAGTC 2 cut(s) 447, 988
PpsI GAGTC 2 cut(s) 447, 988
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 5 cut(s) 78, 129, 276, 705, 918
PspEI GGTNACC 1 cut(s) 457
PspGI CCWGG 5 cut(s) 78, 129, 276, 705, 918
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 3 cut(s) 274, 298, 782
PspXI VCTCGAGB 1 cut(s) 248
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 1061
SacI GAGCTC 1 cut(s) 114
SalI GTCGAC 1 cut(s) 65
SatI GCNGC 2 cut(s) 273, 900
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 3 cut(s) 274, 298, 782
SchI GAGTC 2 cut(s) 448, 989
ScrFI CCNGG 5 cut(s) 80, 131, 278, 707, 920
SduI GDGCHC 3 cut(s) 114, 292, 1048
SfaNI GCATC 6 cut(s) 163, 249, 606, 743, 886, 925
Sfr274I CTCGAG 1 cut(s) 248
SfuI TTCGAA 1 cut(s) 223
SlaI CTCGAG 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 1061
SmlI CTYRAG 2 cut(s) 248, 855
SmoI CTYRAG 2 cut(s) 248, 855
Sse9I AATT 6 cut(s) 231, 348, 494, 699, 743, 911
SsiI CCGC 4 cut(s) 124, 170, 272, 302
SspMI CTAG 2 cut(s) 321, 1081
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 5 cut(s) 78, 129, 276, 705, 918
StyI CCWWGG 3 cut(s) 27, 537, 800
TaaI ACNGT 4 cut(s) 463, 472, 729, 994
TaiI ACGT 1 cut(s) 681
TaqI TCGA 8 cut(s) 54, 66, 195, 223, 249, 600, 675, 1001
TasI AATT 6 cut(s) 231, 348, 494, 699, 743, 911
TatI WGTACW 1 cut(s) 207
TauI GCSGC 1 cut(s) 275
TscAI CASTG 5 cut(s) 163, 390, 734, 784, 999
TseFI GTSAC 2 cut(s) 457, 523
TseI GCWGC 1 cut(s) 899
Tsp45I GTSAC 2 cut(s) 457, 523
TspDTI ATGAA 4 cut(s) 28, 507, 551, 1079
TspRI CASTG 5 cut(s) 163, 390, 734, 784, 999
Van91I CCANNNNNTGG 1 cut(s) 791
XapI RAATTY 4 cut(s) 494, 699, 743, 911
XcmI CCANNNNNNNNNTGG 1 cut(s) 834
XhoI CTCGAG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 911
XspI CTAG 2 cut(s) 321, 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.