Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Forward (+)

41393452 .. 41394536

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG192700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGAACTTGTGAGAATTCTCCCTAGTGCAGAAGATGAGGTCAACGTAGCTTGTTTTCATCCCTCTGTAGGAGGTGGCCTTGTTTATGGAACTAAGGAAGGGAAGTTAAGGATCCTCCAATATGATAGTTCTCATGTCGTGGGTCATACAACTTCCAATTTTCTTAATGAAAACATGCTAGCTAGAGGTCCCAACTTATGCTTTAGAATGCTAGGGACTAGCTGCCATTATCCACTTGTGGGATGTACCGCTCAGCTTAGATGGTTTCTTTCTCTTCTTAAATATCTATTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 ko04140 map04137 map04140

Pfam Domains

Protein Families

WD40

Protein Analysis

98

Amino Acids

10.95

Weight (kDa)

7.72

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	251
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	2 cut(s)	106, 119
AcsI	RAATTY	1 cut(s)	15
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	68, 239
AluBI	AGCT	4 cut(s)	50, 182, 222, 256
AluI	AGCT	4 cut(s)	50, 182, 222, 256
AlwI	GGATC	2 cut(s)	106, 119
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	188
AsuNHI	GCTAGC	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	1 cut(s)	255
BfaI	CTAG	5 cut(s)	24, 179, 183, 212, 219
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	1 cut(s)	223
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	113, 190
BmtI	GCTAGC	1 cut(s)	182
Bpu1102I	GCTNAGC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 239
BseGI	GGATG	2 cut(s)	58, 248
BseLI	CCNNNNNNNGG	2 cut(s)	68, 239
BseMII	CTCAG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	209
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	78
BslFI	GGGAC	2 cut(s)	174, 229
BslI	CCNNNNNNNGG	2 cut(s)	68, 239
BsmFI	GGGAC	2 cut(s)	174, 229
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	111
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	113, 190
BspOI	GCTAGC	1 cut(s)	182
BspPI	GGATC	2 cut(s)	106, 119
BsrBI	CCGCTC	1 cut(s)	251
BssMI	GATC	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	3 cut(s)	93, 252, 257
BstF5I	GGATG	2 cut(s)	58, 248
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	58, 248
Cac8I	GCNNGC	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	2 cut(s)	134, 175
CviJI	RGCY	5 cut(s)	50, 78, 182, 222, 256
CviKI_1	RGCY	5 cut(s)	50, 78, 182, 222, 256
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	3 cut(s)	93, 252, 257
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	15
FaeI	CATG	2 cut(s)	137, 178
FaiI	YATR	6 cut(s)	87, 123, 135, 147, 176, 199
FaqI	GGGAC	2 cut(s)	174, 229
FatI	CATG	2 cut(s)	133, 174
Fnu4HI	GCNGC	1 cut(s)	223
FokI	GGATG	2 cut(s)	45, 255
Fsp4HI	GCNGC	1 cut(s)	223
FspBI	CTAG	5 cut(s)	24, 179, 183, 212, 219
GluI	GCNGC	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	137, 178
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	29
HpyF3I	CTNAG	3 cut(s)	93, 252, 257
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	137, 178
Kzo9I	GATC	1 cut(s)	111
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	5 cut(s)	24, 179, 183, 212, 219
MaeII	ACGT	1 cut(s)	45
MalI	GATC	1 cut(s)	113
MbiI	CCGCTC	1 cut(s)	251
MboI	GATC	1 cut(s)	111
MboII	GAAGA	2 cut(s)	44, 266
MflI	RGATCY	1 cut(s)	111
MluCI	AATT	2 cut(s)	15, 157
MnlI	CCTC	5 cut(s)	31, 65, 73, 125, 179
MseI	TTAA	3 cut(s)	107, 165, 279
Mva1269I	GAATGC	1 cut(s)	213
NdeII	GATC	1 cut(s)	111
NheI	GCTAGC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	137, 178
NlaIV	GGNNCC	2 cut(s)	113, 190
NspI	RCATGY	1 cut(s)	178
PctI	GAATGC	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	224
PpuMI	RGGWCCY	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	113, 190
PspPI	GGNCC	1 cut(s)	188
PspPPI	RGGWCCY	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SaqAI	TTAA	3 cut(s)	107, 165, 279
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	188
SetI	ASST	8 cut(s)	42, 48, 52, 76, 184, 190, 224, 258
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	188
Sse9I	AATT	2 cut(s)	15, 157
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	5 cut(s)	24, 179, 183, 212, 219
TaiI	ACGT	1 cut(s)	48
TasI	AATT	2 cut(s)	15, 157
Tru1I	TTAA	3 cut(s)	107, 165, 279
Tru9I	TTAA	3 cut(s)	107, 165, 279
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	2 cut(s)	47, 183
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	5 cut(s)	24, 179, 183, 212, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.