Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

48583432 .. 48586909

Gene Structure 3478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG359200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGACTTTTGTAACGGTCACTTTGCTTCCTGGAGGCAGCAAATGCTCTTACTGGGGTGCAGTGAGGACGGCTGCGGTCGGTGATGCAGGCGCAGGGGCAGTCTGGCCAAAGTCATCCAAACCTAATATATCAAAAGGAAGAGAGAGATTTGTAAATGAGAAAGAGGTGGTGGTTGCTGCCAGGGCAGCTACAACTGAATTTGTTGCAGATCCGCTTGTGGCTTTTCATGAAAGCACAAACACTACAGATAATAACAAAGGGTTAGAATTGGAGACAAGGAAGCTCCAAGTGCATTTGGTGATAGAGAGCCAAGAAGCCAAAGTACAGATTCACAAGGCTCTACACTACAAAATGCAGCGTATGATCCTGAAAAAATCTGGCAAGAGCAAGCTGCAACAAAGGCGCAGGCTACCTTTAGAGGTTCTCTGCTCGTTGTGCCTTTTGGGCCCTCAAAGGTATAATAAGGCTACAGACCATCTTACACTGATAAAGGTTGGCCTAGACATAAGTGGTTGTGAATCACTGATAGAGGTAGCGTCGCCATCAGTTGAAATCCCACCTGCTATTTATACATGTGGGAGTGGATTTTGTTTTGCGTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

201

Amino Acids

21.96

Weight (kDa)

9.26

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	568
Acc36I	ACCTGC	1 cut(s)	568
AciI	CCGC	2 cut(s)	74, 212
AclWI	GGATC	2 cut(s)	203, 358
AcoI	YGGCCR	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	1 cut(s)	324
AflIII	ACRYGT	1 cut(s)	572
AgsI	TTSAA	1 cut(s)	551
AjnI	CCWGG	2 cut(s)	28, 179
AluBI	AGCT	3 cut(s)	188, 283, 391
AluI	AGCT	3 cut(s)	188, 283, 391
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	2 cut(s)	203, 358
AoxI	GGCC	3 cut(s)	104, 445, 496
ApaI	GGGCCC	1 cut(s)	449
ApeKI	GCWGC	6 cut(s)	36, 71, 176, 185, 355, 391
ApoI	RAATTY	1 cut(s)	197
AspLEI	GCGC	2 cut(s)	92, 405
AspS9I	GGNCC	2 cut(s)	445, 446
AsuHPI	GGTGA	2 cut(s)	92, 310
BaeGI	GKGCMC	1 cut(s)	449
BalI	TGGCCA	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	449
BarI	GAAGNNNNNNTAC	2 cut(s)	306, 338
BbvI	GCAGC	6 cut(s)	48, 58, 163, 197, 367, 378
BccI	CCATC	2 cut(s)	483, 550
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	2 cut(s)	30, 181
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	2 cut(s)	243, 468
BfuAI	ACCTGC	1 cut(s)	568
BglI	GCCNNNNNGGC	1 cut(s)	444
BisI	GCNGC	6 cut(s)	37, 72, 177, 186, 356, 392
BlsI	GCNGC	6 cut(s)	38, 73, 178, 187, 357, 393
Bme1390I	CCNGG	2 cut(s)	30, 181
BmgT120I	GGNCC	2 cut(s)	445, 446
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	30, 181
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	73
BmuI	ACTGGG	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	56
BseBI	CCWGG	2 cut(s)	30, 181
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	449
BseXI	GCAGC	6 cut(s)	48, 58, 163, 197, 367, 378
BsgI	GTGCAG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	3 cut(s)	106, 447, 498
BsiEI	CGRYCG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	106, 447, 498
Bsp120I	GGGCCC	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp143I	GATC	2 cut(s)	208, 363
BspACI	CCGC	2 cut(s)	74, 212
BspANI	GGCC	3 cut(s)	106, 447, 498
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	447
BspMI	ACCTGC	1 cut(s)	568
BspPI	GGATC	2 cut(s)	203, 358
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	208, 363
Bst2UI	CCWGG	2 cut(s)	30, 181
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	133
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstC8I	GCNNGC	3 cut(s)	88, 389, 407
BstF5I	GGATG	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	92, 405
BstKTI	GATC	2 cut(s)	211, 366
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	2 cut(s)	208, 363
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 182, 185, 289, 400, 435, 444
BstNI	CCWGG	2 cut(s)	30, 181
BstNSI	RCATGY	1 cut(s)	576
BstSCI	CCNGG	2 cut(s)	28, 179
BstSFI	CTRYAG	2 cut(s)	243, 468
BstSLI	GKGCMC	1 cut(s)	449
BstV1I	GCAGC	6 cut(s)	48, 58, 163, 197, 367, 378
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	3 cut(s)	106, 447, 498
BtsCI	GGATG	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	3 cut(s)	66, 482, 521
BveI	ACCTGC	1 cut(s)	568
Cac8I	GCNNGC	3 cut(s)	88, 389, 407
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	2 cut(s)	92, 405
Cfr13I	GGNCC	2 cut(s)	445, 446
CseI	GACGC	1 cut(s)	525
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	2 cut(s)	227, 573
CviQI	GTAC	1 cut(s)	323
DpnI	GATC	2 cut(s)	210, 365
DpnII	GATC	2 cut(s)	208, 363
EaeI	YGGCCR	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	28, 179
EcoT38I	GRGCYC	1 cut(s)	449
FaeI	CATG	2 cut(s)	230, 576
FaiI	YATR	7 cut(s)	128, 228, 362, 459, 506, 570, 574
FatI	CATG	2 cut(s)	226, 572
Fnu4HI	GCNGC	6 cut(s)	37, 72, 177, 186, 356, 392
FokI	GGATG	1 cut(s)	100
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	6 cut(s)	37, 72, 177, 186, 356, 392
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	2 cut(s)	91, 404
GluI	GCNGC	6 cut(s)	37, 72, 177, 186, 356, 392
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	106, 447, 498
HgaI	GACGC	1 cut(s)	525
HhaI	GCGC	2 cut(s)	92, 405
Hin1II	CATG	2 cut(s)	230, 576
Hin6I	GCGC	2 cut(s)	90, 403
HinP1I	GCGC	2 cut(s)	90, 403
HinfI	GANTC	2 cut(s)	328, 518
HphI	GGTGA	2 cut(s)	92, 310
Hpy188III	TCNNGA	2 cut(s)	227, 367
Hpy99I	CGWCG	1 cut(s)	541
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	6 cut(s)	59, 86, 206, 292, 355, 394
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 182, 185, 289, 400, 435, 444
Hsp92II	CATG	2 cut(s)	230, 576
HspAI	GCGC	2 cut(s)	90, 403
Kzo9I	GATC	2 cut(s)	208, 363
LmnI	GCTCC	1 cut(s)	288
Lsp1109I	GCAGC	6 cut(s)	48, 58, 163, 197, 367, 378
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	500
MaeIII	GTNAC	2 cut(s)	10, 16
MalI	GATC	2 cut(s)	210, 365
MboI	GATC	2 cut(s)	208, 363
MboII	GAAGA	1 cut(s)	150
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	449
MlsI	TGGCCA	1 cut(s)	106
MluCI	AATT	2 cut(s)	197, 266
MluNI	TGGCCA	1 cut(s)	106
MnlI	CCTC	6 cut(s)	26, 57, 157, 412, 459, 523
Mox20I	TGGCCA	1 cut(s)	106
MscI	TGGCCA	1 cut(s)	106
Msp20I	TGGCCA	1 cut(s)	106
MspR9I	CCNGG	2 cut(s)	30, 181
MvaI	CCWGG	2 cut(s)	30, 181
MwoI	GCNNNNNNNGC	7 cut(s)	42, 182, 185, 289, 400, 435, 444
NdeII	GATC	2 cut(s)	208, 363
NlaIII	CATG	2 cut(s)	230, 576
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	576
PagI	TCATGA	1 cut(s)	226
PaqCI	CACCTGC	1 cut(s)	568
PciI	ACATGT	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	328, 518
PfoI	TCCNGGA	1 cut(s)	28
PkrI	GCNGC	6 cut(s)	38, 73, 178, 187, 357, 393
PscI	ACATGT	1 cut(s)	572
Psp6I	CCWGG	2 cut(s)	28, 179
PspGI	CCWGG	2 cut(s)	28, 179
PspN4I	GGNNCC	1 cut(s)	447
PspOMI	GGGCCC	1 cut(s)	445
PspPI	GGNCC	2 cut(s)	445, 446
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SatI	GCNGC	6 cut(s)	37, 72, 177, 186, 356, 392
Sau3AI	GATC	2 cut(s)	208, 363
Sau96I	GGNCC	2 cut(s)	445, 446
ScrFI	CCNGG	2 cut(s)	30, 181
SduI	GDGCHC	1 cut(s)	449
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	2 cut(s)	243, 468
Sse9I	AATT	2 cut(s)	197, 266
SsiI	CCGC	2 cut(s)	74, 212
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	2 cut(s)	28, 179
TaaI	ACNGT	1 cut(s)	16
TasI	AATT	2 cut(s)	197, 266
TatI	WGTACW	1 cut(s)	322
TfiI	GAWTC	2 cut(s)	328, 518
TscAI	CASTG	3 cut(s)	66, 489, 528
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	6 cut(s)	36, 71, 176, 185, 355, 391
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	215, 243
TspRI	CASTG	3 cut(s)	66, 489, 528
XapI	RAATTY	1 cut(s)	197
XceI	RCATGY	1 cut(s)	576
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.