Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Forward (+)

37926957 .. 37929454

Gene Structure 2498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38416

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCAAGAACTTGGGATTATAGGTCTAAAAACTATGTTCCATATCAGGTATATAGAGTTTCTGATATGGAACTTGTGAGAATTCTCCCTAGTGCAGAAGATGAGGTCAACGTAGCTTGTTTTCATCCCTCTGTAGGAGGTGGCCTTGTTTATGGAACTAAGGAAGGGAAGTTAAGGATCCTCCAATATGATAGTTCTCATGTCGTGGGTCATACAACTTCCAATTTTCTTAATGAAAACATGCTAGCTAGAGGTCCCAACTTATGCTTTAGAATGCTAGGGACTAGCTGCCATTATCCACTTGTGGGATGTACCGCTCAGCTTAGATGGATCAAATCATGTTGTACTCATGAAGCTTGTCGCAGAATTACACCATATTTATACCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 ko04140 map04137 map04140

Pfam Domains

Protein Families

WD40

Protein Analysis

129

Amino Acids

14.74

Weight (kDa)

8.71

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	317
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	3 cut(s)	172, 185, 338
AcsI	RAATTY	1 cut(s)	81
AfaI	GTAC	2 cut(s)	313, 346
AfiI	CCNNNNNNNGG	2 cut(s)	134, 305
AluBI	AGCT	5 cut(s)	116, 248, 288, 322, 356
AluI	AGCT	5 cut(s)	116, 248, 288, 322, 356
AlwI	GGATC	3 cut(s)	172, 185, 338
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	288
ApoI	RAATTY	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	254
AsuNHI	GCTAGC	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	1 cut(s)	321
BfaI	CTAG	5 cut(s)	90, 245, 249, 278, 285
BfmI	CTRYAG	2 cut(s)	132, 386
BisI	GCNGC	1 cut(s)	289
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	179, 256
BmtI	GCTAGC	1 cut(s)	248
Bpu1102I	GCTNAGC	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 305
BseGI	GGATG	2 cut(s)	124, 314
BseLI	CCNNNNNNNGG	2 cut(s)	134, 305
BseMII	CTCAG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	240, 295
BslI	CCNNNNNNNGG	2 cut(s)	134, 305
BsmFI	GGGAC	2 cut(s)	240, 295
BsmI	GAATGC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	177, 330
Bsp1720I	GCTNAGC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	331
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	179, 256
BspOI	GCTAGC	1 cut(s)	248
BspPI	GGATC	3 cut(s)	172, 185, 338
BsrBI	CCGCTC	1 cut(s)	317
BssMI	GATC	2 cut(s)	177, 330
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	159, 318, 323
BstF5I	GGATG	2 cut(s)	124, 314
BstKTI	GATC	2 cut(s)	180, 333
BstMBI	GATC	2 cut(s)	177, 330
BstNSI	RCATGY	1 cut(s)	244
BstSFI	CTRYAG	2 cut(s)	132, 386
BstV1I	GCAGC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	124, 314
Cac8I	GCNNGC	1 cut(s)	246
CciI	TCATGA	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	312, 345
CviAII	CATG	4 cut(s)	200, 241, 339, 350
CviJI	RGCY	6 cut(s)	116, 144, 248, 288, 322, 356
CviKI_1	RGCY	6 cut(s)	116, 144, 248, 288, 322, 356
CviQI	GTAC	2 cut(s)	312, 345
DdeI	CTNAG	3 cut(s)	159, 318, 323
DpnI	GATC	2 cut(s)	179, 332
DpnII	GATC	2 cut(s)	177, 330
Eco47I	GGWCC	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	81
FaeI	CATG	4 cut(s)	203, 244, 342, 353
FaqI	GGGAC	2 cut(s)	240, 295
FatI	CATG	4 cut(s)	199, 240, 338, 349
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	2 cut(s)	111, 321
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	5 cut(s)	90, 245, 249, 278, 285
GluI	GCNGC	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	144
Hin1II	CATG	4 cut(s)	203, 244, 342, 353
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	354
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	95
HpyF3I	CTNAG	3 cut(s)	159, 318, 323
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	203, 244, 342, 353
Kzo9I	GATC	2 cut(s)	177, 330
LpnPI	CCDG	1 cut(s)	32
Lsp1109I	GCAGC	1 cut(s)	275
MaeI	CTAG	5 cut(s)	90, 245, 249, 278, 285
MaeII	ACGT	1 cut(s)	111
MalI	GATC	2 cut(s)	179, 332
MbiI	CCGCTC	1 cut(s)	317
MboI	GATC	2 cut(s)	177, 330
MboII	GAAGA	1 cut(s)	110
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	3 cut(s)	81, 223, 366
MnlI	CCTC	5 cut(s)	97, 131, 139, 191, 245
MseI	TTAA	2 cut(s)	173, 231
Mva1269I	GAATGC	1 cut(s)	279
NdeII	GATC	2 cut(s)	177, 330
NheI	GCTAGC	1 cut(s)	244
NlaIII	CATG	4 cut(s)	203, 244, 342, 353
NlaIV	GGNNCC	2 cut(s)	179, 256
NspI	RCATGY	1 cut(s)	244
PagI	TCATGA	1 cut(s)	349
PctI	GAATGC	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	290
PpuMI	RGGWCCY	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	179, 256
PspPI	GGNCC	1 cut(s)	254
PspPPI	RGGWCCY	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	2 cut(s)	313, 346
RsaNI	GTAC	2 cut(s)	312, 345
SaqAI	TTAA	2 cut(s)	173, 231
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	2 cut(s)	177, 330
Sau96I	GGNCC	1 cut(s)	254
SfcI	CTRYAG	2 cut(s)	132, 386
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	3 cut(s)	81, 223, 366
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	5 cut(s)	90, 245, 249, 278, 285
TaiI	ACGT	1 cut(s)	114
TasI	AATT	3 cut(s)	81, 223, 366
TatI	WGTACW	1 cut(s)	344
Tru1I	TTAA	2 cut(s)	173, 231
Tru9I	TTAA	2 cut(s)	173, 231
TseI	GCWGC	1 cut(s)	288
TspDTI	ATGAA	3 cut(s)	113, 249, 366
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	81
XceI	RCATGY	1 cut(s)	244
XspI	CTAG	5 cut(s)	90, 245, 249, 278, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.