pycom01g22090

Protein SGT1 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
19819208 .. 19821892
2685 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g22090.7

Sequence Viewer

Length: 1083 bp
ATGGCTTCCGATCTCGAACAGCGTGCCAAGGAGGCGTTCATGGACGACCACTTCGAGTTGGCCGTCGACCTCTACACCCAGGCCATCGCTCTCAACCCCCAGAGCGCCGAGCTCTACTCCGACCGCGCCCAGGCCAACATCAAAGCCGGCAATCTCACTGAGGCTGTTGCGGATGCGAACAAGGCAATTGAGTTCGACACGTCATTGTACAAAGCGTATTTTCGAAAAGGAATTGCCTGCATCAAGCTCGAGGAATATGAGACTGCAAAGGCGGCCCTGGAAACCGGTGCTCCTTTGGCCCCGCAGGAGACAAGATTTGCTAGTTTGATAAAAGAGTGTGATGAAAAAATTGCAGAGGAAACTGGTGTTCTACCAACGCATTCGGTGGAGGAAAACATTACAGAGAATGTTATACCTGCAAAAGATGTTGAGCCTGTGAGTCAACCTTCCAATCAGGTGACCGTAGCAACTGTCAAACCAAAATACAGGCATGAATTCTACCAGAAGCCAGAAGAAGTGGTTGTGACTATATTCGCCAAGGGCATACCTGCCAAAGATGTACATGTTGACTTTGGTGAACAAATACTAAGTGTTAGCGTCGATGTTGCTGGTGAAGATACATATCATTTTCAACCTCGCTTATTTGGAAAGATAATACCTGAAAAATGCAGGTTCGACATTCTCTCCACCAAAGTTGAAATTCGCCTGGCTAAAGCTGAACCAATACATTGGACATCTCTTGAATTCAGCAAGGACAGCCTTGTTCCAGTAAGGGTCAGTGGCCCAGTTGTTGGAGCGACAAGACCATCCTACCCATCCTCAAAACCAAAAAAGGACTGGGATAAGCTTGAGGCTCAAGTAAAGAAGGAGGAAAAAGAAGAGAAGCTTGATGGTGATGCAGCTCTGAACAAATTTTTCCAGGACATATACAAGGATGCGGATGAGGACACAAGAAGGGCCATGAGAAAATCTTTTGTGGAGTCAAACGGGACAGTGCTTTCGACAAACTGGAAAGAAGTGGGAAACAAAAAGGTTGAGGGAAGTGCTCCCGACGGCATGGAGATGAAGAAATGGGAGTTCTAG

Protein Analysis

361

Amino Acids

40.34

Weight (kDa)

5.12

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 424, 556, 660
AccB7I CCANNNNNTGG 1 cut(s) 791
AccI GTMKAC 1 cut(s) 66
AccII CGCG 1 cut(s) 126
AciI CCGC 5 cut(s) 124, 170, 272, 302, 938
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 4 cut(s) 494, 699, 743, 911
AfaI GTAC 2 cut(s) 209, 561
AfiI CCNNNNNNNGG 2 cut(s) 130, 791
AflIII ACRYGT 2 cut(s) 198, 562
AgeI ACCGGT 1 cut(s) 284
AgsI TTSAA 3 cut(s) 632, 698, 743
AjiI CACGTC 1 cut(s) 201
AjnI CCWGG 5 cut(s) 78, 129, 276, 705, 918
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 6 cut(s) 112, 247, 716, 847, 886, 902
AluI AGCT 6 cut(s) 112, 247, 716, 847, 886, 902
Alw21I GWGCWC 3 cut(s) 114, 292, 1048
Alw26I GTCTC 2 cut(s) 254, 302
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 7 cut(s) 60, 81, 132, 273, 297, 781, 957
ApeKI GCWGC 1 cut(s) 899
ApoI RAATTY 4 cut(s) 494, 699, 743, 911
ArsI GACNNNNNNTTYG 4 cut(s) 35, 67, 982, 1014
AsiGI ACCGGT 1 cut(s) 284
AspLEI GCGC 2 cut(s) 107, 128
AspS9I GGNCC 4 cut(s) 274, 298, 782, 957
AsuHPI GGTGA 4 cut(s) 469, 587, 623, 905
AsuII TTCGAA 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 248
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 3 cut(s) 114, 292, 1048
BbvI GCAGC 1 cut(s) 911
BccI CCATC 4 cut(s) 92, 814, 823, 884
BceAI ACGGC 2 cut(s) 47, 1069
BcgI CGANNNNNNTGC 4 cut(s) 5, 39, 229, 263
BciT130I CCWGG 5 cut(s) 80, 131, 278, 707, 920
BcoDI GTCTC 2 cut(s) 254, 302
BfaI CTAG 2 cut(s) 321, 1081
BfoI RGCGCY 1 cut(s) 108
BfuAI ACCTGC 3 cut(s) 424, 556, 660
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 2 cut(s) 273, 900
BlsI GCNGC 2 cut(s) 274, 901
Bme1390I CCNGG 5 cut(s) 80, 131, 278, 707, 920
BmeT110I CYCGRG 1 cut(s) 248
BmgBI CACGTC 1 cut(s) 201
BmgT120I GGNCC 4 cut(s) 274, 298, 782, 957
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 5 cut(s) 80, 131, 278, 707, 920
BmrI ACTGGG 2 cut(s) 779, 847
BmsI GCATC 4 cut(s) 163, 249, 886, 925
BmuI ACTGGG 2 cut(s) 779, 847
BplI GAGNNNNNCTC 2 cut(s) 101, 133
Bpu14I TTCGAA 1 cut(s) 223
BpuEI CTTGAG 2 cut(s) 840, 869
BsaBI GATNNNNATC 1 cut(s) 621
BsaJI CCNNGG 5 cut(s) 27, 78, 129, 276, 537
BsaWI WCCGGW 1 cut(s) 284
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 668, 698
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 791
Bse118I RCCGGY 2 cut(s) 146, 284
Bse1I ACTGG 5 cut(s) 367, 767, 785, 842, 1013
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 5 cut(s) 80, 131, 278, 707, 920
BseDI CCNNGG 5 cut(s) 27, 78, 129, 276, 537
BseGI GGATG 5 cut(s) 178, 806, 815, 940, 946
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 2 cut(s) 130, 791
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 5 cut(s) 367, 767, 785, 842, 1013
BseXI GCAGC 1 cut(s) 911
Bsh1236I CGCG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 7 cut(s) 62, 83, 134, 275, 299, 783, 959
BshTI ACCGGT 1 cut(s) 284
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 3 cut(s) 114, 292, 1048
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 2 cut(s) 147, 285
BslFI GGGAC 1 cut(s) 1003
BslI CCNNNNNNNGG 2 cut(s) 130, 791
BsmAI GTCTC 2 cut(s) 254, 302
BsmFI GGGAC 1 cut(s) 1003
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 7 cut(s) 62, 83, 134, 275, 299, 783, 959
BsoBI CYCGRG 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 223
Bsp1286I GDGCHC 3 cut(s) 114, 292, 1048
Bsp1407I TGTACA 2 cut(s) 207, 559
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 5 cut(s) 124, 170, 272, 302, 938
BspANI GGCC 7 cut(s) 62, 83, 134, 275, 299, 783, 959
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 300
BspMI ACCTGC 3 cut(s) 424, 556, 660
BspT104I TTCGAA 1 cut(s) 223
BsrFI RCCGGY 2 cut(s) 146, 284
BsrGI TGTACA 2 cut(s) 207, 559
BsrI ACTGG 5 cut(s) 367, 767, 785, 842, 1013
BssAI RCCGGY 2 cut(s) 146, 284
BssECI CCNNGG 5 cut(s) 27, 78, 129, 276, 537
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 2 cut(s) 27, 537
Bst2UI CCWGG 5 cut(s) 80, 131, 278, 707, 920
Bst4CI ACNGT 3 cut(s) 463, 472, 994
Bst6I CTCTTC 1 cut(s) 873
BstAUI TGTACA 2 cut(s) 207, 559
BstBI TTCGAA 1 cut(s) 223
BstC8I GCNNGC 3 cut(s) 24, 148, 238
BstDEI CTNAG 2 cut(s) 159, 587
BstEII GGTNACC 1 cut(s) 457
BstF5I GGATG 5 cut(s) 178, 806, 815, 940, 946
BstFNI CGCG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 2 cut(s) 107, 128
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 2 cut(s) 254, 302
BstMBI GATC 1 cut(s) 10
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 5 cut(s) 32, 182, 272, 296, 756
BstNI CCWGG 5 cut(s) 80, 131, 278, 707, 920
BstNSI RCATGY 1 cut(s) 566
BstPI GGTNACC 1 cut(s) 457
BstSCI CCNGG 5 cut(s) 78, 129, 276, 705, 918
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 911
BstXI CCANNNNNNTGG 1 cut(s) 729
BsuRI GGCC 7 cut(s) 62, 83, 134, 275, 299, 783, 959
BtgZI GCGATG 1 cut(s) 70
BtrI CACGTC 1 cut(s) 201
BtsCI GGATG 5 cut(s) 178, 806, 815, 940, 946
BtsIMutI CAGTG 3 cut(s) 156, 784, 999
BveI ACCTGC 3 cut(s) 424, 556, 660
Cac8I GCNNGC 3 cut(s) 24, 148, 238
CfoI GCGC 2 cut(s) 107, 128
Cfr10I RCCGGY 2 cut(s) 146, 284
Cfr13I GGNCC 4 cut(s) 274, 298, 782, 957
CseI GACGC 1 cut(s) 586
Csp6I GTAC 2 cut(s) 208, 560
CspAI ACCGGT 1 cut(s) 284
CspCI CAANNNNNGTGG 2 cut(s) 676, 711
CviAII CATG 5 cut(s) 40, 491, 563, 961, 1057
CviQI GTAC 2 cut(s) 208, 560
DdeI CTNAG 2 cut(s) 159, 587
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 873
Ecl136II GAGCTC 1 cut(s) 112
Eco130I CCWWGG 2 cut(s) 27, 537
Eco24I GRGCYC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 248
Eco91I GGTNACC 1 cut(s) 457
EcoICRI GAGCTC 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 457
EcoRI GAATTC 2 cut(s) 494, 743
EcoRII CCWGG 5 cut(s) 78, 129, 276, 705, 918
EcoT14I CCWWGG 2 cut(s) 27, 537
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 2 cut(s) 27, 537
FaeI CATG 5 cut(s) 43, 494, 566, 964, 1060
FalI AAGNNNNNCTT 2 cut(s) 870, 902
FaqI GGGAC 1 cut(s) 1003
FatI CATG 5 cut(s) 39, 490, 562, 960, 1056
FauI CCCGC 1 cut(s) 309
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 273, 900
FokI GGATG 5 cut(s) 185, 793, 802, 947, 953
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 273, 900
FspBI CTAG 2 cut(s) 321, 1081
GlaI GCGC 2 cut(s) 106, 127
GluI GCNGC 2 cut(s) 273, 900
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 7 cut(s) 62, 83, 134, 275, 299, 783, 959
HapII CCGG 2 cut(s) 147, 285
HgaI GACGC 1 cut(s) 586
HhaI GCGC 2 cut(s) 107, 128
Hin1II CATG 5 cut(s) 43, 494, 566, 964, 1060
Hin6I GCGC 2 cut(s) 105, 126
HinP1I GCGC 2 cut(s) 105, 126
HincII GTYRAC 3 cut(s) 67, 443, 568
HindII GTYRAC 3 cut(s) 67, 443, 568
HindIII AAGCTT 2 cut(s) 845, 884
HinfI GANTC 2 cut(s) 439, 980
HpaII CCGG 2 cut(s) 147, 285
HphI GGTGA 4 cut(s) 469, 587, 623, 905
Hpy166II GTNNAC 4 cut(s) 67, 443, 568, 578
Hpy188I TCNGA 3 cut(s) 10, 121, 906
Hpy188III TCNNGA 3 cut(s) 14, 740, 1049
Hpy8I GTNNAC 4 cut(s) 67, 443, 568, 578
Hpy99I CGWCG 3 cut(s) 68, 602, 1055
HpyAV CCTTC 3 cut(s) 456, 859, 948
HpyCH4III ACNGT 3 cut(s) 463, 472, 994
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 6 cut(s) 240, 266, 353, 419, 669, 899
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 182, 272, 296, 756
HpyF3I CTNAG 2 cut(s) 159, 587
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 5 cut(s) 43, 494, 566, 964, 1060
HspAI GCGC 2 cut(s) 105, 126
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 3 cut(s) 295, 794, 1051
Lsp1109I GCAGC 1 cut(s) 911
LweI GCATC 4 cut(s) 163, 249, 886, 925
MaeI CTAG 2 cut(s) 321, 1081
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 2 cut(s) 457, 523
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 4 cut(s) 524, 626, 890, 1078
MfeI CAATTG 1 cut(s) 186
MhlI GDGCHC 3 cut(s) 114, 292, 1048
MluCI AATT 7 cut(s) 186, 231, 348, 494, 699, 743, 911
MlyI GAGTC 2 cut(s) 448, 989
MmeI TCCRAC 2 cut(s) 144, 772
MroNI GCCGGC 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 1061
MspI CCGG 2 cut(s) 147, 285
MspR9I CCNGG 5 cut(s) 80, 131, 278, 707, 920
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 5 cut(s) 80, 131, 278, 707, 920
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 5 cut(s) 32, 182, 272, 296, 756
NaeI GCCGGC 1 cut(s) 148
NdeII GATC 1 cut(s) 10
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 5 cut(s) 43, 494, 566, 964, 1060
NlaIV GGNNCC 1 cut(s) 300
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 2 cut(s) 457, 523
NspI RCATGY 1 cut(s) 566
NspV TTCGAA 1 cut(s) 223
PaeR7I CTCGAG 1 cut(s) 248
PciI ACATGT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 60
PctI GAATGC 1 cut(s) 379
PdiI GCCGGC 1 cut(s) 148
PflMI CCANNNNNTGG 1 cut(s) 791
PfoI TCCNGGA 1 cut(s) 918
PinAI ACCGGT 1 cut(s) 284
PkrI GCNGC 2 cut(s) 274, 901
PleI GAGTC 2 cut(s) 447, 988
PpsI GAGTC 2 cut(s) 447, 988
PscI ACATGT 1 cut(s) 562
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 5 cut(s) 78, 129, 276, 705, 918
PspEI GGTNACC 1 cut(s) 457
PspGI CCWGG 5 cut(s) 78, 129, 276, 705, 918
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 4 cut(s) 274, 298, 782, 957
PspXI VCTCGAGB 1 cut(s) 248
RsaI GTAC 2 cut(s) 209, 561
RsaNI GTAC 2 cut(s) 208, 560
RseI CAYNNNNRTG 1 cut(s) 1061
SacI GAGCTC 1 cut(s) 114
SalI GTCGAC 1 cut(s) 65
SatI GCNGC 2 cut(s) 273, 900
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 4 cut(s) 274, 298, 782, 957
SchI GAGTC 2 cut(s) 448, 989
ScrFI CCNGG 5 cut(s) 80, 131, 278, 707, 920
SduI GDGCHC 3 cut(s) 114, 292, 1048
SfaNI GCATC 4 cut(s) 163, 249, 886, 925
Sfr274I CTCGAG 1 cut(s) 248
SfuI TTCGAA 1 cut(s) 223
SlaI CTCGAG 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 1061
SmlI CTYRAG 3 cut(s) 248, 848, 855
SmoI CTYRAG 3 cut(s) 248, 848, 855
Sse9I AATT 7 cut(s) 186, 231, 348, 494, 699, 743, 911
SsiI CCGC 5 cut(s) 124, 170, 272, 302, 938
SspMI CTAG 2 cut(s) 321, 1081
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 5 cut(s) 78, 129, 276, 705, 918
StyI CCWWGG 2 cut(s) 27, 537
TaaI ACNGT 3 cut(s) 463, 472, 994
TaiI ACGT 1 cut(s) 203
TaqI TCGA 9 cut(s) 15, 54, 66, 195, 223, 249, 600, 675, 1001
TasI AATT 7 cut(s) 186, 231, 348, 494, 699, 743, 911
TatI WGTACW 2 cut(s) 207, 559
TauI GCSGC 1 cut(s) 275
TscAI CASTG 3 cut(s) 163, 784, 999
TseFI GTSAC 2 cut(s) 457, 523
TseI GCWGC 1 cut(s) 899
Tsp45I GTSAC 2 cut(s) 457, 523
TspDTI ATGAA 4 cut(s) 28, 357, 507, 1079
TspRI CASTG 3 cut(s) 163, 784, 999
Van91I CCANNNNNTGG 1 cut(s) 791
XapI RAATTY 4 cut(s) 494, 699, 743, 911
XceI RCATGY 1 cut(s) 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 834
XhoI CTCGAG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 2 cut(s) 321, 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.