Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

34941492 .. 34943175

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002477

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGTTATTCGATTTGGGAAATAGTGAAGGCCTTCATCGACGACCACTCCGAGCTCACTCCTAACCTCTACACCCAGGCCATCGTCATCGACCCCAACAACTCCGAGCTCTACTCTGACCGCACTCAGGCCAACATCAAATCCAACAATCTCACTGTTCCTGAATTTCCTCATCTGGGTCTCATTCAATTTTTTCTGTTCTTCAATCTTCTGGGCAGTGACACAAAGTTAATTGGGTCTCTTTTGTTTTGGGTTCTGGATTTTGTTGCTGCTGCATGCTGGGTTTCTGGAGAGATTTTGGTTCTGGGAGTTGATCATTCTCAGGGATGTGATGGTTTTTGGGCTCTTAAGTTTTGTGTGAGGAGCTTGAGCTTCTTTGCTGTTGCCAACTCTGTTGGGGGTCTTCAGGGAAACAATGTTCAAACTCTGACTAACCGCAAAGAGGAGTTCCGTAAATTGCTTGAATCGTATAAGCCGAGTCTTGTATACTTGCAAGGAGAGCAGCTTGAAAATGATGAAGTTGAAGAAGAGAATCTGAACAAAGTCTGGAAGAAAGAGGTGGAAACAGTCTTTGAATCTCATGGCATTTCATGCAAATTGAACTGGGACGAGTGTAAGATGACTGTTAATGCAACAGAACGTACCCTGTTTACAGGGGTGCACGTGCTTTCTGTGTTCTGGCATGTGGTCTTGGCACTGAATGGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

237

Amino Acids

26.77

Weight (kDa)

4.88

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	2 cut(s)	121, 436
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	389
AcvI	CACGTG	1 cut(s)	664
AfaI	GTAC	2 cut(s)	643, 707
AfiI	CCNNNNNNNGG	3 cut(s)	127, 176, 442
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	8 cut(s)	188, 205, 422, 464, 509, 524, 575, 601
AjnI	CCWGG	1 cut(s)	75
AloI	GAACNNNNNNTCC	2 cut(s)	402, 434
AluBI	AGCT	5 cut(s)	55, 109, 366, 372, 505
AluI	AGCT	5 cut(s)	55, 109, 366, 372, 505
Alw21I	GWGCWC	3 cut(s)	57, 111, 663
Alw26I	GTCTC	2 cut(s)	185, 243
Alw44I	GTGCAC	1 cut(s)	659
AoxI	GGCC	3 cut(s)	30, 78, 129
ApaLI	GTGCAC	1 cut(s)	659
ApeKI	GCWGC	3 cut(s)	269, 272, 502
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	663
BanII	GRGCYC	3 cut(s)	57, 111, 346
BbrPI	CACGTG	1 cut(s)	664
BbsI	GAAGAC	1 cut(s)	395
Bbv12I	GWGCWC	3 cut(s)	57, 111, 663
BbvI	GCAGC	3 cut(s)	256, 259, 514
BccI	CCATC	2 cut(s)	89, 326
BciT130I	CCWGG	1 cut(s)	77
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	185, 243
BfrI	CTTAAG	1 cut(s)	347
BisI	GCNGC	3 cut(s)	270, 273, 503
BlsI	GCNGC	3 cut(s)	271, 274, 504
Bme1390I	CCNGG	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	77
BmrI	ACTGGG	1 cut(s)	613
BmuI	ACTGGG	1 cut(s)	613
BpiI	GAAGAC	1 cut(s)	395
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpmI	CTGGAG	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	388
BsaAI	YACGTR	1 cut(s)	664
BsaI	GGTCTC	2 cut(s)	185, 243
BsaJI	CCNNGG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 176, 442
Bse1I	ACTGG	1 cut(s)	608
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	332
BseLI	CCNNNNNNNGG	3 cut(s)	127, 176, 442
BseMII	CTCAG	2 cut(s)	140, 335
BseNI	ACTGG	1 cut(s)	608
BseRI	GAGGAG	2 cut(s)	376, 458
BseSI	GKGCMC	1 cut(s)	663
BseXI	GCAGC	3 cut(s)	256, 259, 514
BseYI	CCCAGC	1 cut(s)	279
BshFI	GGCC	3 cut(s)	32, 80, 131
BsiHKAI	GWGCWC	3 cut(s)	57, 111, 663
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	3 cut(s)	127, 176, 442
BsmAI	GTCTC	2 cut(s)	185, 243
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	3 cut(s)	32, 80, 131
Bso31I	GGTCTC	2 cut(s)	185, 243
Bsp1286I	GDGCHC	4 cut(s)	57, 111, 346, 663
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	2 cut(s)	121, 436
BspANI	GGCC	3 cut(s)	32, 80, 131
BspCNI	CTCAG	2 cut(s)	139, 334
BspTI	CTTAAG	1 cut(s)	347
BspTNI	GGTCTC	2 cut(s)	185, 243
BsrI	ACTGG	1 cut(s)	608
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	313
BssNAI	GTATAC	1 cut(s)	487
Bst1107I	GTATAC	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	3 cut(s)	157, 568, 625
Bst6I	CTCTTC	1 cut(s)	522
BstAFI	CTTAAG	1 cut(s)	347
BstAPI	GCANNNNNTGC	1 cut(s)	591
BstBAI	YACGTR	1 cut(s)	664
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	126, 321
BstF5I	GGATG	1 cut(s)	332
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	2 cut(s)	185, 243
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	499, 591
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	2 cut(s)	279, 686
BstSCI	CCNGG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	663
BstV1I	GCAGC	3 cut(s)	256, 259, 514
BstV2I	GAAGAC	1 cut(s)	395
BstZ17I	GTATAC	1 cut(s)	487
BsuRI	GGCC	3 cut(s)	32, 80, 131
BtsCI	GGATG	1 cut(s)	332
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	3 cut(s)	153, 223, 695
Cac8I	GCNNGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	642, 706
CviAII	CATG	4 cut(s)	276, 581, 591, 683
CviQI	GTAC	2 cut(s)	642, 706
DdeI	CTNAG	2 cut(s)	126, 321
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Ecl136II	GAGCTC	2 cut(s)	55, 109
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	3 cut(s)	57, 111, 346
Eco31I	GGTCTC	2 cut(s)	185, 243
Eco53kI	GAGCTC	2 cut(s)	55, 109
Eco57I	CTGAAG	1 cut(s)	389
Eco72I	CACGTG	1 cut(s)	664
EcoICRI	GAGCTC	2 cut(s)	55, 109
EcoRII	CCWGG	1 cut(s)	75
EcoT38I	GRGCYC	3 cut(s)	57, 111, 346
FaeI	CATG	4 cut(s)	279, 584, 594, 686
FaiI	YATR	6 cut(s)	277, 471, 487, 582, 592, 684
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	4 cut(s)	275, 580, 590, 682
FbaI	TGATCA	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	270, 273, 503
FokI	GGATG	1 cut(s)	339
FriOI	GRGCYC	3 cut(s)	57, 111, 346
Fsp4HI	GCNGC	3 cut(s)	270, 273, 503
GluI	GCNGC	3 cut(s)	270, 273, 503
GsaI	CCCAGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	32, 80, 131
Hin1II	CATG	4 cut(s)	279, 584, 594, 686
HinfI	GANTC	4 cut(s)	464, 478, 532, 575
Hpy166II	GTNNAC	3 cut(s)	487, 651, 661
Hpy188I	TCNGA	5 cut(s)	52, 106, 118, 429, 537
Hpy188III	TCNNGA	4 cut(s)	161, 257, 288, 547
Hpy8I	GTNNAC	3 cut(s)	487, 651, 661
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	22, 43
HpyCH4III	ACNGT	3 cut(s)	157, 568, 625
HpyCH4IV	ACGT	2 cut(s)	640, 663
HpyCH4V	TGCA	5 cut(s)	275, 493, 594, 632, 661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	499, 591
HpyF3I	CTNAG	2 cut(s)	126, 321
HpySE526I	ACGT	2 cut(s)	640, 663
Hsp92II	CATG	4 cut(s)	279, 584, 594, 686
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	363
Lsp1109I	GCAGC	3 cut(s)	256, 259, 514
MaeII	ACGT	2 cut(s)	640, 663
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	6 cut(s)	193, 200, 395, 536, 539, 562
MhlI	GDGCHC	4 cut(s)	57, 111, 346, 663
MluCI	AATT	5 cut(s)	164, 188, 231, 455, 596
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	5 cut(s)	77, 180, 354, 436, 550
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	3 cut(s)	230, 348, 627
MspCI	CTTAAG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	499, 591
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	4 cut(s)	279, 584, 594, 686
NmeAIII	GCCGAG	1 cut(s)	501
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	2 cut(s)	279, 686
PaeI	GCATGC	1 cut(s)	279
PceI	AGGCCT	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 473
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	3 cut(s)	464, 532, 575
PkrI	GCNGC	3 cut(s)	271, 274, 504
PleI	GAGTC	1 cut(s)	486
PmaCI	CACGTG	1 cut(s)	664
PmlI	CACGTG	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	486
Ppu21I	YACGTR	1 cut(s)	664
Psp124BI	GAGCTC	2 cut(s)	57, 111
Psp6I	CCWGG	1 cut(s)	75
PspCI	CACGTG	1 cut(s)	664
PspFI	CCCAGC	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	75
RsaI	GTAC	2 cut(s)	643, 707
RsaNI	GTAC	2 cut(s)	642, 706
SacI	GAGCTC	2 cut(s)	57, 111
SaqAI	TTAA	3 cut(s)	230, 348, 627
SatI	GCNGC	3 cut(s)	270, 273, 503
Sau3AI	GATC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	4 cut(s)	57, 111, 346, 663
SetI	ASST	9 cut(s)	57, 69, 111, 368, 374, 507, 561, 643, 666
SmlI	CTYRAG	2 cut(s)	347, 367
SmoI	CTYRAG	2 cut(s)	347, 367
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	5 cut(s)	164, 188, 231, 455, 596
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	2 cut(s)	121, 436
SstI	GAGCTC	2 cut(s)	57, 111
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	157, 568, 625
TaiI	ACGT	2 cut(s)	643, 666
TaqI	TCGA	3 cut(s)	11, 39, 90
TasI	AATT	5 cut(s)	164, 188, 231, 455, 596
TfiI	GAWTC	3 cut(s)	464, 532, 575
Tru1I	TTAA	3 cut(s)	230, 348, 627
Tru9I	TTAA	3 cut(s)	230, 348, 627
TscAI	CASTG	3 cut(s)	160, 223, 702
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	3 cut(s)	269, 272, 502
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	25, 531, 579
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	3 cut(s)	160, 223, 702
Vha464I	CTTAAG	1 cut(s)	347
VneI	GTGCAC	1 cut(s)	659
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	2 cut(s)	279, 686
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.