Rh2CG261700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001064
Physical Location & Seq
Reverse (-)
28083369 .. 28110080
26712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG261700.1

Sequence Viewer

Length: 348 bp
ATGGAGGCAATGACCTTGGCTGCAGATTCCATATATCATGAAGCCGTCGCCGATGCACATCCTTGCTCTGAGATCCGAACCCCAACTAGTCCAAATGGCCTCCACACTTTGTTCTTTGTTTCTGGGTTTGCAGATTTCAGGTCTCTTTGCTTTGGAGAAATGGAGGCCACAATGCCCATTTGCAAGACTGATACTCTAACTCCGGCTGTTCTTTGGTGGAAGATATGGGGGTCGAAGATTTGGGATTTGAGAAGGTCCAAGGACCACTTGGGACTGTCACTAAATGAGAGAATTCTGCCAAGGAAAATGGGAAACTGGAAGAAGGGTCAGGCCATAATGAGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.98

Weight (kDa)

7.77

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 291
AhlI ACTAGT 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 67
AoxI GGCC 3 cut(s) 97, 165, 330
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 255, 262
AvaII GGWCC 2 cut(s) 255, 262
BanII GRGCYC 1 cut(s) 344
BbvI GCAGC 1 cut(s) 7
BceAI ACGGC 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 147
BcuI ACTAGT 1 cut(s) 86
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme18I GGWCC 2 cut(s) 255, 262
BmgT120I GGNCC 2 cut(s) 255, 262
BmsI GCATC 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 15, 258, 299
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 15, 258, 299
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 57
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 3 cut(s) 99, 167, 332
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 3 cut(s) 99, 167, 332
Bso31I GGTCTC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 344
Bsp143I GATC 1 cut(s) 72
BspANI GGCC 3 cut(s) 99, 167, 332
BspCNI CTCAG 1 cut(s) 61
BspHI TCATGA 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 3 cut(s) 15, 258, 299
BssMI GATC 1 cut(s) 72
BssT1I CCWWGG 3 cut(s) 15, 258, 299
Bst4CI ACNGT 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BsuRI GGCC 3 cut(s) 99, 167, 332
BtsCI GGATG 1 cut(s) 58
CciI TCATGA 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 255, 262
CviAII CATG 1 cut(s) 38
CviJI RGCY 7 cut(s) 20, 44, 99, 167, 206, 332, 342
CviKI_1 RGCY 7 cut(s) 20, 44, 99, 167, 206, 332, 342
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eco130I CCWWGG 3 cut(s) 15, 258, 299
Eco24I GRGCYC 1 cut(s) 344
Eco31I GGTCTC 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 255, 262
EcoRI GAATTC 1 cut(s) 291
EcoT14I CCWWGG 3 cut(s) 15, 258, 299
EcoT38I GRGCYC 1 cut(s) 344
ErhI CCWWGG 3 cut(s) 15, 258, 299
FaeI CATG 1 cut(s) 41
FaiI YATR 6 cut(s) 32, 34, 39, 226, 335, 346
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 1 cut(s) 285
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 87
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 3 cut(s) 99, 167, 332
HapII CCGG 1 cut(s) 203
Hin1II CATG 1 cut(s) 41
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 70, 77
Hpy188III TCNNGA 1 cut(s) 38
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 246, 316
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 4 cut(s) 23, 56, 131, 183
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 1 cut(s) 41
Kzo9I GATC 1 cut(s) 72
LpnPI CCDG 5 cut(s) 108, 124, 216, 301, 314
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 276
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 3 cut(s) 232, 247, 331
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 1 cut(s) 291
MnlI CCTC 2 cut(s) 110, 157
MspI CCGG 1 cut(s) 203
NdeII GATC 1 cut(s) 72
NlaIII CATG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 276
PagI TCATGA 1 cut(s) 37
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 22
PspPI GGNCC 2 cut(s) 255, 262
PstI CTGCAG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 72
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 72
Sau96I GGNCC 2 cut(s) 255, 262
SduI GDGCHC 1 cut(s) 344
SetI ASST 3 cut(s) 17, 143, 257
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 2 cut(s) 255, 262
SpeI ACTAGT 1 cut(s) 86
Sse9I AATT 1 cut(s) 291
SspMI CTAG 1 cut(s) 87
StyI CCWWGG 3 cut(s) 15, 258, 299
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 233
TasI AATT 1 cut(s) 291
TfiI GAWTC 1 cut(s) 26
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 1 cut(s) 54
VpaK11BI GGWCC 2 cut(s) 255, 262
XapI RAATTY 1 cut(s) 291
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.