Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009862.1

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

20391 .. 20781

Gene Structure 391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009862.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atgggttattcgatctgtgaaatagcgaaggccttcatcaacgaccactttgagctcgtcgttgacctctacacccaggccattgccgtcgaccccaacaactctgagttttgctccaaccgtgctcaggccaacatcagatccaataatctcaccgaggctgtggaaaacctaatgggtagacctcaagtgttctttagatcttttggcagtggcgtgttgctttcggcggatttgaaattcagctatgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

84

Amino Acids

9.33

Weight (kDa)

4.83

Isoelectric Point (pI)

25.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 181
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	2 cut(s)	55, 246
AluI	AGCT	2 cut(s)	55, 246
Alw21I	GWGCWC	2 cut(s)	57, 127
AlwI	GGATC	1 cut(s)	135
AoxI	GGCC	3 cut(s)	30, 78, 129
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	57, 127
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	77
BglII	AGATCT	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu10I	CCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	75, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	75, 156
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	96, 140
BshFI	GGCC	3 cut(s)	32, 80, 131
BsiHKAI	GWGCWC	2 cut(s)	57, 127
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	3 cut(s)	32, 80, 131
Bsp1286I	GDGCHC	2 cut(s)	57, 127
Bsp143I	GATC	3 cut(s)	12, 140, 200
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	3 cut(s)	32, 80, 131
BspCNI	CTCAG	2 cut(s)	97, 139
BspPI	GGATC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	75, 156
BssMI	GATC	3 cut(s)	12, 140, 200
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	105, 126
BstKTI	GATC	3 cut(s)	15, 143, 203
BstMBI	GATC	3 cut(s)	12, 140, 200
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	140, 200
BstYI	RGATCY	2 cut(s)	140, 200
BsuRI	GGCC	3 cut(s)	32, 80, 131
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	217
CviJI	RGCY	6 cut(s)	32, 55, 80, 131, 161, 246
CviKI_1	RGCY	6 cut(s)	32, 55, 80, 131, 161, 246
DdeI	CTNAG	2 cut(s)	105, 126
DpnI	GATC	3 cut(s)	14, 142, 202
DpnII	GATC	3 cut(s)	12, 140, 200
EciI	GGCGGA	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	55
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	57
FaiI	YATR	1 cut(s)	249
FblI	GTMKAC	2 cut(s)	90, 181
FriOI	GRGCYC	1 cut(s)	57
HaeIII	GGCC	3 cut(s)	32, 80, 131
HincII	GTYRAC	2 cut(s)	64, 91
HindII	GTYRAC	2 cut(s)	64, 91
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	3 cut(s)	64, 91, 182
Hpy188I	TCNGA	2 cut(s)	106, 140
Hpy8I	GTNNAC	3 cut(s)	64, 91, 182
Hpy99I	CGWCG	2 cut(s)	62, 92
HpyAV	CCTTC	2 cut(s)	22, 43
HpyCH4III	ACNGT	1 cut(s)	122
HpyF3I	CTNAG	2 cut(s)	105, 126
Kzo9I	GATC	3 cut(s)	12, 140, 200
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	3 cut(s)	62, 89, 113
MalI	GATC	3 cut(s)	14, 142, 202
MboI	GATC	3 cut(s)	12, 140, 200
MflI	RGATCY	2 cut(s)	140, 200
MhlI	GDGCHC	2 cut(s)	57, 127
MluCI	AATT	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	77, 151, 195
MroXI	GAANNNNTTC	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
NdeII	GATC	3 cut(s)	12, 140, 200
PceI	AGGCCT	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PsuI	RGATCY	2 cut(s)	140, 200
SacI	GAGCTC	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	89
Sau3AI	GATC	3 cut(s)	12, 140, 200
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	57, 127
SetI	ASST	5 cut(s)	57, 69, 174, 187, 248
SgeI	CNNG	8 cut(s)	68, 88, 89, 134, 140, 169, 200, 229
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	239
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	11, 90
TasI	AATT	1 cut(s)	239
TscAI	CASTG	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	217
XapI	RAATTY	1 cut(s)	239
XmiI	GTMKAC	2 cut(s)	90, 181
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.