Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Forward (+)

24546510 .. 24548038

Gene Structure 1529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG208200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCTTGCAGGGAAAGTTGGTTTAGGGATTTGGAAGGTTCTATATTTGAAAACGGGCTTCAGGATTGTGTGTTATCGGCCTTCCTGCAATGGGCAATTCACCGGCTAAATGGATCAAGACTGTCATATTTGGGAAGAAGTCATCCAAACCTAATATATCAAAAGGAAGAGAGCTTTGTAAATGAGAAAGATGTGGTGGTTGCTGCCAGGGCAGCTACAACTGAATTTGTTGCAGATCCACCTGTGGTTTTTCATGAAAGCACAAACACTACAGATAGGAACAAAGGGTTAGAATTGAAGACAAGGAAGCTCCAAGTGCATTTGGTGATAGAAGGCCAAGAAGCCAAAGTACAGATTCACAAGGCTCTACACTACAAAATGCAGCGTATGATCCTGAAAAAATCATGCAAGAGCAAGCTGCAACAAAGGCACAGGCTACCTTTAGAGGTTCTCTGGCTCGCTGTGCCTTTTGGGCCCTCAAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

162

Amino Acids

18.64

Weight (kDa)

9.48

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	121, 230, 385
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	50, 298
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	4 cut(s)	174, 215, 310, 418
AluI	AGCT	4 cut(s)	174, 215, 310, 418
AlwI	GGATC	3 cut(s)	121, 230, 385
AoxI	GGCC	3 cut(s)	78, 334, 473
ApaI	GGGCCC	1 cut(s)	477
ApeKI	GCWGC	4 cut(s)	203, 212, 382, 418
ApoI	RAATTY	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	473, 474
AsuHPI	GGTGA	2 cut(s)	92, 337
BaeGI	GKGCMC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	477
BarI	GAAGNNNNNNTAC	2 cut(s)	333, 365
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	190, 224, 394, 405
BciT130I	CCWGG	1 cut(s)	208
BfmI	CTRYAG	1 cut(s)	270
BglI	GCCNNNNNGGC	1 cut(s)	472
BisI	GCNGC	4 cut(s)	204, 213, 383, 419
BlsI	GCNGC	4 cut(s)	205, 214, 384, 420
Bme1390I	CCNGG	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	473, 474
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	4 cut(s)	190, 224, 394, 405
BshFI	GGCC	3 cut(s)	80, 336, 475
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	91
BsnI	GGCC	3 cut(s)	80, 336, 475
Bsp120I	GGGCCC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	113, 235, 390
BspANI	GGCC	3 cut(s)	80, 336, 475
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	475
BspPI	GGATC	3 cut(s)	121, 230, 385
BsrDI	GCAATG	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	102
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	3 cut(s)	113, 235, 390
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	416, 459
BstF5I	GGATG	1 cut(s)	142
BstKTI	GATC	3 cut(s)	116, 238, 393
BstMBI	GATC	3 cut(s)	113, 235, 390
BstMWI	GCNNNNNNNGC	6 cut(s)	209, 212, 316, 427, 463, 472
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	4 cut(s)	190, 224, 394, 405
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	80, 336, 475
BtsCI	GGATG	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	416, 459
CciI	TCATGA	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	473, 474
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	2 cut(s)	254, 405
CviQI	GTAC	1 cut(s)	350
DpnI	GATC	3 cut(s)	115, 237, 392
DpnII	GATC	3 cut(s)	113, 235, 390
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	477
FaeI	CATG	2 cut(s)	257, 408
FaiI	YATR	7 cut(s)	44, 127, 157, 255, 389, 406, 487
FatI	CATG	2 cut(s)	253, 404
Fnu4HI	GCNGC	4 cut(s)	204, 213, 383, 419
FokI	GGATG	1 cut(s)	129
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	4 cut(s)	204, 213, 383, 419
GluI	GCNGC	4 cut(s)	204, 213, 383, 419
HaeIII	GGCC	3 cut(s)	80, 336, 475
HapII	CCGG	1 cut(s)	103
Hin1II	CATG	2 cut(s)	257, 408
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	2 cut(s)	92, 337
Hpy188III	TCNNGA	4 cut(s)	62, 117, 254, 394
HpyAV	CCTTC	3 cut(s)	29, 91, 326
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4V	TGCA	7 cut(s)	9, 88, 233, 319, 382, 408, 421
HpyF10VI	GCNNNNNNNGC	6 cut(s)	209, 212, 316, 427, 463, 472
Hsp92II	CATG	2 cut(s)	257, 408
Kzo9I	GATC	3 cut(s)	113, 235, 390
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	9 cut(s)	47, 98, 116, 193, 220, 255, 407, 418, 439
Lsp1109I	GCAGC	4 cut(s)	190, 224, 394, 405
MalI	GATC	3 cut(s)	115, 237, 392
MboI	GATC	3 cut(s)	113, 235, 390
MboII	GAAGA	3 cut(s)	147, 179, 310
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	3 cut(s)	96, 224, 293
MnlI	CCTC	2 cut(s)	439, 487
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	6 cut(s)	209, 212, 316, 427, 463, 472
NdeII	GATC	3 cut(s)	113, 235, 390
NlaIII	CATG	2 cut(s)	257, 408
NlaIV	GGNNCC	1 cut(s)	475
PagI	TCATGA	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	4 cut(s)	205, 214, 384, 420
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	475
PspOMI	GGGCCC	1 cut(s)	473
PspPI	GGNCC	2 cut(s)	473, 474
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SatI	GCNGC	4 cut(s)	204, 213, 383, 419
Sau3AI	GATC	3 cut(s)	113, 235, 390
Sau96I	GGNCC	2 cut(s)	473, 474
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	9 cut(s)	40, 153, 176, 217, 244, 312, 420, 442, 450
SfcI	CTRYAG	1 cut(s)	270
Sse9I	AATT	3 cut(s)	96, 224, 293
StyD4I	CCNGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	123
TasI	AATT	3 cut(s)	96, 224, 293
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	355
TseI	GCWGC	4 cut(s)	203, 212, 382, 418
TspDTI	ATGAA	2 cut(s)	242, 270
XapI	RAATTY	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.