Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8488007.1

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2084

Gene Structure 2084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8488007.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 874 bp

ttttgtttgtgttacaagaattgcctgcctgaagcttgaggaatatcagactgcaaaggcagcattggaacttggtgcttcttatgctccagaggaacctagattcgctaatctgataaaagagtgtgatgagctcatagcagcggaaaataacgagctaccaaagcaaccaatggaaacaaccactacagagagtgttacagccgcaaaagatgttgagccagtgaacctgccttccgatcaggtgacagtagcacctgtcaaaccaaaatacaggcatgaattctaccagaagcctgaagaagtggtcgtgactatatttgcaaagggcataccagccaaagatgttgctgttgaatttggtgaacaaatattaagtgtcagcattgatgttcctggtgaagatacatatcattttcagcctcgcctgtttgggaagatcattcctgaaaagtgcagatttgatgttttgtctaccaaggttgaaattcgcctggccaaagctgaatccatacagtggacatctcttgagttcagcaaggataaccctgttcctctaaaggtcaatgccccagttattggagcccaaaggccatcttacccatcctccaaaccaaagcgggtagattgggacaagctcgaagccgaagtgaagaaggaggagaaagatgagaagcttgatggcgatgcagctttgaacaaatttttccaagacatatacaaggatgctgatgaggacacaagaagggccatgagaaaatcttttgtggagtcaaacgggacggtgctttcgacaaactggaaagaagtgggcaacaagaaggtcgagggaagtgcccctgatggaatggagatgaagaaatgggagtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

290

Amino Acids

32.71

Weight (kDa)

5.12

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
AccB7I	CCANNNNNTGG	2 cut(s)	517, 579
AccI	GTMKAC	1 cut(s)	474
AciI	CCGC	3 cut(s)	144, 205, 620
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	4 cut(s)	282, 357, 487, 702
AcuI	CTGAAG	2 cut(s)	51, 319
AfaI	GTAC	1 cut(s)	870
AfiI	CCNNNNNNNGG	2 cut(s)	517, 579
AgsI	TTSAA	3 cut(s)	357, 486, 698
AjnI	CCWGG	2 cut(s)	395, 493
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
AluBI	AGCT	7 cut(s)	35, 134, 158, 504, 638, 677, 693
AluI	AGCT	7 cut(s)	35, 134, 158, 504, 638, 677, 693
Alw21I	GWGCWC	1 cut(s)	136
AoxI	GGCC	3 cut(s)	496, 591, 748
ApeKI	GCWGC	3 cut(s)	60, 141, 690
ApoI	RAATTY	4 cut(s)	282, 357, 487, 702
ArsI	GACNNNNNNTTYG	2 cut(s)	773, 805
AspS9I	GGNCC	1 cut(s)	748
AsuHPI	GGTGA	3 cut(s)	257, 375, 411
BaeGI	GKGCMC	1 cut(s)	839
BalI	TGGCCA	1 cut(s)	498
BanII	GRGCYC	2 cut(s)	136, 587
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	3 cut(s)	72, 153, 702
BccI	CCATC	4 cut(s)	602, 611, 675, 837
BcgI	CGANNNNNNTGC	2 cut(s)	816, 850
BciT130I	CCWGG	2 cut(s)	397, 495
BfaI	CTAG	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	187
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	4 cut(s)	61, 142, 205, 691
BlsI	GCNGC	4 cut(s)	62, 143, 206, 692
BmcAI	AGTACT	1 cut(s)	870
Bme1390I	CCNGG	2 cut(s)	397, 495
BmgT120I	GGNCC	1 cut(s)	748
BmiI	GGNNCC	2 cut(s)	97, 584
BmrFI	CCNGG	2 cut(s)	397, 495
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	2 cut(s)	677, 716
BmuI	ACTGGG	1 cut(s)	567
BpmI	CTGGAG	1 cut(s)	73
BpuEI	CTTGAG	2 cut(s)	57, 549
BsaBI	GATNNNNATC	1 cut(s)	409
BsaJI	CCNNGG	1 cut(s)	478
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 579
Bse1I	ACTGG	3 cut(s)	222, 573, 804
Bse8I	GATNNNNATC	1 cut(s)	409
BseBI	CCWGG	2 cut(s)	397, 495
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	2 cut(s)	603, 731
BseJI	GATNNNNATC	1 cut(s)	409
BseLI	CCNNNNNNNGG	2 cut(s)	517, 579
BseNI	ACTGG	3 cut(s)	222, 573, 804
BseRI	GAGGAG	1 cut(s)	675
BseSI	GKGCMC	1 cut(s)	839
BseXI	GCAGC	3 cut(s)	72, 153, 702
BsgI	GTGCAG	1 cut(s)	476
BshFI	GGCC	3 cut(s)	498, 593, 750
BsiHKAI	GWGCWC	1 cut(s)	136
BslFI	GGGAC	2 cut(s)	645, 794
BslI	CCNNNNNNNGG	2 cut(s)	517, 579
BsmFI	GGGAC	2 cut(s)	645, 794
BsnI	GGCC	3 cut(s)	498, 593, 750
Bsp1286I	GDGCHC	3 cut(s)	136, 587, 839
Bsp143I	GATC	2 cut(s)	239, 439
BspACI	CCGC	3 cut(s)	144, 205, 620
BspANI	GGCC	3 cut(s)	498, 593, 750
BspLI	GGNNCC	2 cut(s)	97, 584
BspMI	ACCTGC	1 cut(s)	238
BsrI	ACTGG	3 cut(s)	222, 573, 804
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	2 cut(s)	239, 439
BssT1I	CCWWGG	1 cut(s)	478
Bst2UI	CCWGG	2 cut(s)	397, 495
Bst4CI	ACNGT	3 cut(s)	251, 517, 785
BstC8I	GCNNGC	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	603, 731
BstKTI	GATC	2 cut(s)	242, 442
BstMBI	GATC	2 cut(s)	239, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 84, 164
BstNI	CCWGG	2 cut(s)	397, 495
BstSCI	CCNGG	2 cut(s)	395, 493
BstSFI	CTRYAG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	839
BstV1I	GCAGC	3 cut(s)	72, 153, 702
BsuRI	GGCC	3 cut(s)	498, 593, 750
BtgZI	GCGATG	1 cut(s)	700
BtsCI	GGATG	2 cut(s)	603, 731
BtsIMutI	CAGTG	2 cut(s)	229, 522
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	748
Csp6I	GTAC	1 cut(s)	869
CviAII	CATG	2 cut(s)	279, 752
CviQI	GTAC	1 cut(s)	869
DpnI	GATC	2 cut(s)	241, 441
DpnII	GATC	2 cut(s)	239, 439
EaeI	YGGCCR	1 cut(s)	496
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	478
Eco24I	GRGCYC	2 cut(s)	136, 587
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	51, 319
EcoICRI	GAGCTC	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	282
EcoRII	CCWGG	2 cut(s)	395, 493
EcoT14I	CCWWGG	1 cut(s)	478
EcoT38I	GRGCYC	2 cut(s)	136, 587
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	2 cut(s)	282, 755
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	2 cut(s)	645, 794
FatI	CATG	2 cut(s)	278, 751
FauI	CCCGC	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	4 cut(s)	61, 142, 205, 691
FokI	GGATG	2 cut(s)	590, 738
FriOI	GRGCYC	2 cut(s)	136, 587
Fsp4HI	GCNGC	4 cut(s)	61, 142, 205, 691
FspBI	CTAG	1 cut(s)	100
GluI	GCNGC	4 cut(s)	61, 142, 205, 691
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	3 cut(s)	498, 593, 750
Hin1II	CATG	2 cut(s)	282, 755
HindIII	AAGCTT	2 cut(s)	33, 675
HinfI	GANTC	3 cut(s)	103, 507, 771
HphI	GGTGA	3 cut(s)	257, 375, 411
Hpy166II	GTNNAC	4 cut(s)	227, 366, 475, 520
Hpy188I	TCNGA	3 cut(s)	49, 115, 239
Hpy188III	TCNNGA	4 cut(s)	90, 311, 447, 528
Hpy8I	GTNNAC	4 cut(s)	227, 366, 475, 520
HpyAV	CCTTC	4 cut(s)	244, 650, 739, 815
HpyCH4III	ACNGT	3 cut(s)	251, 517, 785
HpyCH4V	TGCA	4 cut(s)	54, 324, 457, 690
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 84, 164
Hsp92II	CATG	2 cut(s)	282, 755
Kzo9I	GATC	2 cut(s)	239, 439
LmnI	GCTCC	2 cut(s)	92, 582
Lsp1109I	GCAGC	3 cut(s)	72, 153, 702
LweI	GCATC	2 cut(s)	677, 716
MaeI	CTAG	1 cut(s)	100
MaeIII	GTNAC	4 cut(s)	11, 197, 245, 311
MalI	GATC	2 cut(s)	241, 441
MboI	GATC	2 cut(s)	239, 439
MboII	GAAGA	5 cut(s)	312, 414, 449, 665, 869
MhlI	GDGCHC	3 cut(s)	136, 587, 839
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	5 cut(s)	19, 282, 357, 487, 702
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	780
MnlI	CCTC	8 cut(s)	32, 86, 433, 565, 617, 653, 728, 821
Mox20I	TGGCCA	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	1 cut(s)	375
Msp20I	TGGCCA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	397, 495
MvaI	CCWGG	2 cut(s)	397, 495
MwoI	GCNNNNNNNGC	3 cut(s)	60, 84, 164
NdeII	GATC	2 cut(s)	239, 439
NlaIII	CATG	2 cut(s)	282, 755
NlaIV	GGNNCC	2 cut(s)	97, 584
NmuCI	GTSAC	2 cut(s)	245, 311
PcsI	WCGNNNNNNNCGW	1 cut(s)	789
PfeI	GAWTC	2 cut(s)	103, 507
PflMI	CCANNNNNTGG	2 cut(s)	517, 579
PkrI	GCNGC	4 cut(s)	62, 143, 206, 692
PleI	GAGTC	1 cut(s)	779
PpsI	GAGTC	1 cut(s)	779
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	395, 493
PspGI	CCWGG	2 cut(s)	395, 493
PspN4I	GGNNCC	2 cut(s)	97, 584
PspPI	GGNCC	1 cut(s)	748
RsaI	GTAC	1 cut(s)	870
RsaNI	GTAC	1 cut(s)	869
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	4 cut(s)	61, 142, 205, 691
Sau3AI	GATC	2 cut(s)	239, 439
Sau96I	GGNCC	1 cut(s)	748
ScaI	AGTACT	1 cut(s)	870
SchI	GAGTC	1 cut(s)	780
ScrFI	CCNGG	2 cut(s)	397, 495
SduI	GDGCHC	3 cut(s)	136, 587, 839
SfaNI	GCATC	2 cut(s)	677, 716
SfcI	CTRYAG	1 cut(s)	187
SmlI	CTYRAG	2 cut(s)	36, 528
SmoI	CTYRAG	2 cut(s)	36, 528
Sse9I	AATT	5 cut(s)	19, 282, 357, 487, 702
SsiI	CCGC	3 cut(s)	144, 205, 620
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	1 cut(s)	100
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	395, 493
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	3 cut(s)	251, 517, 785
TaqI	TCGA	3 cut(s)	640, 792, 826
TasI	AATT	5 cut(s)	19, 282, 357, 487, 702
TatI	WGTACW	1 cut(s)	868
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	103, 507
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	2 cut(s)	229, 522
TseFI	GTSAC	2 cut(s)	245, 311
TseI	GCWGC	3 cut(s)	60, 141, 690
Tsp45I	GTSAC	2 cut(s)	245, 311
TspDTI	ATGAA	2 cut(s)	295, 870
TspRI	CASTG	2 cut(s)	229, 522
Van91I	CCANNNNNTGG	2 cut(s)	517, 579
XapI	RAATTY	4 cut(s)	282, 357, 487, 702
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	1 cut(s)	100
ZrmI	AGTACT	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.