Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

9982475 .. 10025013

Gene Structure 42539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG107300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTGTTAACATCGCCCTTTCAAACTTTGAGCAGAATATGACTAAAAGTGCTAGTAGTTTTGGGCTTCGAAAGAATGAAAGGGCTACTGACACGTGCACTGAGACAACACTCGGTGATGTGGTTAGTCCTCCCTTCAGTCCTTTTGTAGCTGAGAGTGAAGAAACAAAGAACGATTTTCCAAAAAAAAGAAACAAAGAACGAGGAAGAAGGTACAGAGTACTGGTGTTAAGAAATGTGGCCCAGATTTGCGCTGGTGTTAAGAAGATATTGGACACGTGGGAACGAGAGAGGGACACGGTCCTAGTAGAGAACTTGGCCAAGGGAATCCTAAAACGGGCTTCAGGATTGTGTGTTATCGGCCTTCCTGCAATGGGCAAGTCATCGGCTAAATGGATCAAGACTGTCCTATTTGGGAAGAAGTCATCCAAACCTAATATATCAAAAGGAAGAGAGAGATTTGTAAATGAGAAAGAGGTGGTGGTTGCTGCCAGGGCAGCTACAACTGAATTTGTTGCAGATCCGCTTGTGGCTTTTCATGAAAGCACAAACACTACAGATAATAACAAAGGGTTAGAATTGGAGACAAGGAAGCTCCAAGTGCATTTGGTGATAGAGAGCCAGGAAGCCAAAGTACAGATTCACAAGGCTCTAAACTACAAAATGCAGCGTATGATCCTGAAAAAATCAGGCAAGAGCAAGCTGCAACAAAGGCACAGACTACCTTTAGAGGTTCTCTGGATGGTAGGCATGGAAAGGCTTGGGGAGTCGTTCATAAGGAAGGCTTGCCAGCTGCAGATGCTCCCAAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

271

Amino Acids

30.65

Weight (kDa)

10.03

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	524
AclWI	GGATC	3 cut(s)	404, 515, 670
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	2 cut(s)	121, 327
AcvI	CACGTG	2 cut(s)	96, 279
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	3 cut(s)	215, 222, 636
AfiI	CCNNNNNNNGG	2 cut(s)	337, 374
AflIII	ACRYGT	2 cut(s)	93, 276
AgsI	TTSAA	1 cut(s)	24
AjnI	CCWGG	2 cut(s)	491, 621
AluBI	AGCT	5 cut(s)	152, 500, 595, 703, 793
AluI	AGCT	5 cut(s)	152, 500, 595, 703, 793
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	2 cut(s)	98, 578
Alw44I	GTGCAC	1 cut(s)	97
AlwI	GGATC	3 cut(s)	404, 515, 670
AoxI	GGCC	3 cut(s)	240, 318, 361
ApaLI	GTGCAC	1 cut(s)	97
ApeKI	GCWGC	5 cut(s)	488, 497, 667, 703, 793
ApoI	RAATTY	1 cut(s)	509
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	241, 301
AsuHPI	GGTGA	2 cut(s)	128, 622
AsuII	TTCGAA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	320
BarI	GAAGNNNNNNTAC	2 cut(s)	618, 650
BbrPI	CACGTG	2 cut(s)	96, 279
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	5 cut(s)	475, 509, 679, 690, 780
BccI	CCATC	1 cut(s)	736
BciT130I	CCWGG	2 cut(s)	493, 623
BcoDI	GTCTC	2 cut(s)	98, 578
BfaI	CTAG	2 cut(s)	54, 305
BfmI	CTRYAG	2 cut(s)	555, 794
BisI	GCNGC	5 cut(s)	489, 498, 668, 704, 794
BlsI	GCNGC	5 cut(s)	490, 499, 669, 705, 795
BmcAI	AGTACT	1 cut(s)	222
Bme1390I	CCNGG	2 cut(s)	493, 623
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	241, 301
BmrFI	CCNGG	2 cut(s)	493, 623
BmsI	GCATC	1 cut(s)	789
Bpu14I	TTCGAA	1 cut(s)	70
BsaAI	YACGTR	2 cut(s)	96, 279
BsaJI	CCNNGG	2 cut(s)	321, 492
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 374
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	493, 623
BseDI	CCNNGG	2 cut(s)	321, 492
BseGI	GGATG	2 cut(s)	425, 747
BseLI	CCNNNNNNNGG	2 cut(s)	337, 374
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	93, 144
BseNI	ACTGG	1 cut(s)	228
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	5 cut(s)	475, 509, 679, 690, 780
BshFI	GGCC	3 cut(s)	242, 320, 363
BsiHKAI	GWGCWC	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	337, 374
BsmAI	GTCTC	2 cut(s)	98, 578
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	3 cut(s)	242, 320, 363
Bsp119I	TTCGAA	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	3 cut(s)	396, 520, 675
BspACI	CCGC	1 cut(s)	524
BspANI	GGCC	3 cut(s)	242, 320, 363
BspCNI	CTCAG	2 cut(s)	94, 145
BspHI	TCATGA	1 cut(s)	538
BspMAI	CTGCAG	1 cut(s)	798
BspPI	GGATC	3 cut(s)	404, 515, 670
BspT104I	TTCGAA	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	2 cut(s)	321, 492
BssMI	GATC	3 cut(s)	396, 520, 675
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	493, 623
Bst4CI	ACNGT	2 cut(s)	301, 406
Bst6I	CTCTTC	1 cut(s)	445
BstBAI	YACGTR	2 cut(s)	96, 279
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	701, 787, 791
BstDEI	CTNAG	2 cut(s)	102, 153
BstF5I	GGATG	2 cut(s)	425, 747
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	3 cut(s)	399, 523, 678
BstMAI	GTCTC	2 cut(s)	98, 578
BstMBI	GATC	3 cut(s)	396, 520, 675
BstMWI	GCNNNNNNNGC	5 cut(s)	494, 497, 601, 712, 799
BstNI	CCWGG	2 cut(s)	493, 623
BstSCI	CCNGG	2 cut(s)	491, 621
BstSFI	CTRYAG	2 cut(s)	555, 794
BstSLI	GKGCMC	1 cut(s)	101
BstV1I	GCAGC	5 cut(s)	475, 509, 679, 690, 780
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	242, 320, 363
BtsCI	GGATG	2 cut(s)	425, 747
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	701, 787, 791
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	241, 301
Csp6I	GTAC	3 cut(s)	214, 221, 635
CviAII	CATG	2 cut(s)	539, 751
CviQI	GTAC	3 cut(s)	214, 221, 635
DdeI	CTNAG	2 cut(s)	102, 153
DpnI	GATC	3 cut(s)	398, 522, 677
DpnII	GATC	3 cut(s)	396, 520, 675
DraIII	CACNNNGTG	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	301
Eco57I	CTGAAG	2 cut(s)	121, 327
Eco72I	CACGTG	2 cut(s)	96, 279
EcoRII	CCWGG	2 cut(s)	491, 621
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	542, 754
FaiI	YATR	6 cut(s)	41, 440, 540, 674, 752, 776
FalI	AAGNNNNNCTT	2 cut(s)	769, 801
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	2 cut(s)	538, 750
Fnu4HI	GCNGC	5 cut(s)	489, 498, 668, 704, 794
FokI	GGATG	2 cut(s)	412, 754
Fsp4HI	GCNGC	5 cut(s)	489, 498, 668, 704, 794
FspBI	CTAG	2 cut(s)	54, 305
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	5 cut(s)	489, 498, 668, 704, 794
HaeIII	GGCC	3 cut(s)	242, 320, 363
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	542, 754
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	327, 640, 767
HpaI	GTTAAC	1 cut(s)	10
HphI	GGTGA	2 cut(s)	128, 622
Hpy166II	GTNNAC	2 cut(s)	10, 99
Hpy188III	TCNNGA	5 cut(s)	345, 400, 539, 679, 739
Hpy8I	GTNNAC	2 cut(s)	10, 99
HpyAV	CCTTC	4 cut(s)	145, 204, 374, 775
HpyCH4III	ACNGT	2 cut(s)	301, 406
HpyCH4IV	ACGT	2 cut(s)	95, 278
HpyCH4V	TGCA	7 cut(s)	99, 371, 518, 604, 667, 706, 796
HpyF10VI	GCNNNNNNNGC	5 cut(s)	494, 497, 601, 712, 799
HpyF3I	CTNAG	2 cut(s)	102, 153
HpySE526I	ACGT	2 cut(s)	95, 278
Hsp92II	CATG	2 cut(s)	542, 754
HspAI	GCGC	1 cut(s)	252
KspAI	GTTAAC	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	396, 520, 675
LmnI	GCTCC	2 cut(s)	600, 807
Lsp1109I	GCAGC	5 cut(s)	475, 509, 679, 690, 780
LweI	GCATC	1 cut(s)	789
MaeI	CTAG	2 cut(s)	54, 305
MaeII	ACGT	2 cut(s)	95, 278
MalI	GATC	3 cut(s)	398, 522, 677
MboI	GATC	3 cut(s)	396, 520, 675
MboII	GAAGA	5 cut(s)	173, 219, 277, 430, 462
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	1 cut(s)	101
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	2 cut(s)	509, 578
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	776
MnlI	CCTC	5 cut(s)	141, 197, 285, 469, 724
Mox20I	TGGCCA	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	3 cut(s)	9, 230, 261
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	793
MspR9I	CCNGG	2 cut(s)	493, 623
MvaI	CCWGG	2 cut(s)	493, 623
MwoI	GCNNNNNNNGC	5 cut(s)	494, 497, 601, 712, 799
NdeII	GATC	3 cut(s)	396, 520, 675
NlaIII	CATG	2 cut(s)	542, 754
NspV	TTCGAA	1 cut(s)	70
PagI	TCATGA	1 cut(s)	538
PfeI	GAWTC	2 cut(s)	327, 640
PflFI	GACNNNGTC	1 cut(s)	299
PkrI	GCNGC	5 cut(s)	490, 499, 669, 705, 795
PleI	GAGTC	1 cut(s)	775
PmaCI	CACGTG	2 cut(s)	96, 279
PmlI	CACGTG	2 cut(s)	96, 279
PpsI	GAGTC	1 cut(s)	775
Ppu21I	YACGTR	2 cut(s)	96, 279
Psp6I	CCWGG	2 cut(s)	491, 621
PspCI	CACGTG	2 cut(s)	96, 279
PspGI	CCWGG	2 cut(s)	491, 621
PspPI	GGNCC	2 cut(s)	241, 301
PstI	CTGCAG	1 cut(s)	798
PsuI	RGATCY	1 cut(s)	520
PsyI	GACNNNGTC	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	793
RsaI	GTAC	3 cut(s)	215, 222, 636
RsaNI	GTAC	3 cut(s)	214, 221, 635
SaqAI	TTAA	3 cut(s)	9, 230, 261
SatI	GCNGC	5 cut(s)	489, 498, 668, 704, 794
Sau3AI	GATC	3 cut(s)	396, 520, 675
Sau96I	GGNCC	2 cut(s)	241, 301
ScaI	AGTACT	1 cut(s)	222
SchI	GAGTC	1 cut(s)	776
ScrFI	CCNGG	2 cut(s)	493, 623
SduI	GDGCHC	1 cut(s)	101
SfaNI	GCATC	1 cut(s)	789
SfcI	CTRYAG	2 cut(s)	555, 794
SfuI	TTCGAA	1 cut(s)	70
SinI	GGWCC	1 cut(s)	301
Sse9I	AATT	2 cut(s)	509, 578
SsiI	CCGC	1 cut(s)	524
SspMI	CTAG	2 cut(s)	54, 305
StyD4I	CCNGG	2 cut(s)	491, 621
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	301, 406
TaiI	ACGT	2 cut(s)	98, 281
TaqI	TCGA	1 cut(s)	70
TasI	AATT	2 cut(s)	509, 578
TatI	WGTACW	2 cut(s)	220, 634
TfiI	GAWTC	2 cut(s)	327, 640
Tru1I	TTAA	3 cut(s)	9, 230, 261
Tru9I	TTAA	3 cut(s)	9, 230, 261
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	5 cut(s)	488, 497, 667, 703, 793
TspDTI	ATGAA	4 cut(s)	93, 527, 555, 763
TspRI	CASTG	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	299
VneI	GTGCAC	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	1 cut(s)	509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	2 cut(s)	54, 305
ZrmI	AGTACT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.