Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Forward (+)

29768957 .. 29770619

Gene Structure 1663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018439

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGTTATTCGATATGGGAAATAGCAAAGGCCTTCATCGACGACCACTCCGAGCTCACCGCTAACCTCTACACCCAGGCCATCGTCGTCGACCCCAACAACTCCGAGCTCTACTCCGACCGCACTCAGGCCAACATCAAATCCAACAATCTCACTGTGACACAAAGTTGGGTCTCTTTTGTTTTGGGTTCTGGATCTTGGTCTGGAGAGATTTTGGTTCTGGGAGTTGATCATTCTCAGGGATGTGATGGTTTTTGGGCTCTTAAGTTTTGTGTGAGGAGCTTGAGCTTCTTTGCTGTTGCCAACTCTGTTGGGGGTCTTCAGGGAAACAATGTTCAAACTCTGACTAACCGCAAAGAGGAGTTCCGTAAATTGCTTGAATCGTATAAGCCGAGTCTTGTATACTTGCAAGGAGAGCAGCTTGAAAATGATGAAGTTGAAGAAGAGAATCTGAACGAAGTCTGGAAGAAAGAGGTGGAAACAGTCTTTGAATCTCATGGCCTTTCATGCAAATTGAACTGGGATGAGTGTAAGATGACTGTTAATGCAACAGAACGTACCCTGTTTACAAGGGTGCACGTGCTTTTTGTGTTCTGGCATGTGGTCTTGGCACTGAATGGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

209

Amino Acids

23.61

Weight (kDa)

4.87

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 402
AciI	CCGC	3 cut(s)	60, 121, 352
AclWI	GGATC	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	305
AcvI	CACGTG	1 cut(s)	580
AfaI	GTAC	2 cut(s)	559, 623
AfiI	CCNNNNNNNGG	2 cut(s)	127, 358
AflII	CTTAAG	1 cut(s)	263
AgsI	TTSAA	6 cut(s)	338, 380, 425, 440, 491, 517
AjnI	CCWGG	1 cut(s)	75
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	5 cut(s)	55, 109, 282, 288, 421
AluI	AGCT	5 cut(s)	55, 109, 282, 288, 421
Alw21I	GWGCWC	3 cut(s)	57, 111, 579
Alw26I	GTCTC	1 cut(s)	178
Alw44I	GTGCAC	1 cut(s)	575
AlwI	GGATC	1 cut(s)	202
AoxI	GGCC	4 cut(s)	30, 78, 129, 499
ApaLI	GTGCAC	1 cut(s)	575
ApeKI	GCWGC	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	579
BanII	GRGCYC	3 cut(s)	57, 111, 262
BbrPI	CACGTG	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	311
Bbv12I	GWGCWC	3 cut(s)	57, 111, 579
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	2 cut(s)	89, 242
BciT130I	CCWGG	1 cut(s)	77
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	178
BfrI	CTTAAG	1 cut(s)	263
BisI	GCNGC	1 cut(s)	419
BlsI	GCNGC	1 cut(s)	420
Bme1390I	CCNGG	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	77
BmrI	ACTGGG	1 cut(s)	529
BmuI	ACTGGG	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	311
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	304
BsaAI	YACGTR	1 cut(s)	580
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 358
Bse1I	ACTGG	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	248, 529
BseLI	CCNNNNNNNGG	2 cut(s)	127, 358
BseMII	CTCAG	2 cut(s)	140, 251
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	2 cut(s)	292, 374
BseSI	GKGCMC	1 cut(s)	579
BseXI	GCAGC	1 cut(s)	430
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	4 cut(s)	32, 80, 131, 501
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	3 cut(s)	57, 111, 579
BslI	CCNNNNNNNGG	2 cut(s)	127, 358
BsmAI	GTCTC	1 cut(s)	178
BsnI	GGCC	4 cut(s)	32, 80, 131, 501
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	4 cut(s)	57, 111, 262, 579
Bsp143I	GATC	2 cut(s)	194, 229
BspACI	CCGC	3 cut(s)	60, 121, 352
BspANI	GGCC	4 cut(s)	32, 80, 131, 501
BspCNI	CTCAG	2 cut(s)	139, 250
BspPI	GGATC	1 cut(s)	202
BspTI	CTTAAG	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	2 cut(s)	194, 229
BssNAI	GTATAC	1 cut(s)	403
Bst1107I	GTATAC	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	3 cut(s)	157, 484, 541
Bst6I	CTCTTC	1 cut(s)	438
BstAFI	CTTAAG	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	580
BstDEI	CTNAG	2 cut(s)	126, 237
BstF5I	GGATG	2 cut(s)	248, 529
BstKTI	GATC	2 cut(s)	197, 232
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	194, 229
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	415, 507
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BstZ17I	GTATAC	1 cut(s)	403
BsuRI	GGCC	4 cut(s)	32, 80, 131, 501
BtsCI	GGATG	2 cut(s)	248, 529
BtsIMutI	CAGTG	2 cut(s)	153, 611
Csp6I	GTAC	2 cut(s)	558, 622
CviAII	CATG	3 cut(s)	497, 507, 599
CviQI	GTAC	2 cut(s)	558, 622
DdeI	CTNAG	2 cut(s)	126, 237
DpnI	GATC	2 cut(s)	196, 231
DpnII	GATC	2 cut(s)	194, 229
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Ecl136II	GAGCTC	2 cut(s)	55, 109
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	3 cut(s)	57, 111, 262
Eco31I	GGTCTC	1 cut(s)	178
Eco53kI	GAGCTC	2 cut(s)	55, 109
Eco57I	CTGAAG	1 cut(s)	305
Eco72I	CACGTG	1 cut(s)	580
EcoICRI	GAGCTC	2 cut(s)	55, 109
EcoRII	CCWGG	1 cut(s)	75
EcoT38I	GRGCYC	3 cut(s)	57, 111, 262
FaeI	CATG	3 cut(s)	500, 510, 602
FaiI	YATR	6 cut(s)	16, 387, 403, 498, 508, 600
FatI	CATG	3 cut(s)	496, 506, 598
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	2 cut(s)	90, 402
Fnu4HI	GCNGC	1 cut(s)	419
FokI	GGATG	2 cut(s)	255, 536
FriOI	GRGCYC	3 cut(s)	57, 111, 262
Fsp4HI	GCNGC	1 cut(s)	419
GluI	GCNGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	4 cut(s)	32, 80, 131, 501
Hin1II	CATG	3 cut(s)	500, 510, 602
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	4 cut(s)	380, 394, 448, 491
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	4 cut(s)	91, 403, 567, 577
Hpy188I	TCNGA	5 cut(s)	52, 106, 118, 345, 453
Hpy188III	TCNNGA	3 cut(s)	192, 204, 463
Hpy8I	GTNNAC	4 cut(s)	91, 403, 567, 577
Hpy99I	CGWCG	3 cut(s)	44, 89, 92
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	3 cut(s)	157, 484, 541
HpyCH4IV	ACGT	2 cut(s)	556, 579
HpyCH4V	TGCA	4 cut(s)	409, 510, 548, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	415, 507
HpyF3I	CTNAG	2 cut(s)	126, 237
HpySE526I	ACGT	2 cut(s)	556, 579
Hsp92II	CATG	3 cut(s)	500, 510, 602
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	194, 229
LmnI	GCTCC	1 cut(s)	279
Lsp1109I	GCAGC	1 cut(s)	430
MaeII	ACGT	2 cut(s)	556, 579
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	196, 231
MboI	GATC	2 cut(s)	194, 229
MboII	GAAGA	4 cut(s)	311, 452, 455, 478
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	4 cut(s)	57, 111, 262, 579
MluCI	AATT	2 cut(s)	371, 512
MlyI	GAGTC	1 cut(s)	403
MmeI	TCCRAC	2 cut(s)	141, 168
MnlI	CCTC	4 cut(s)	77, 270, 352, 466
MseI	TTAA	2 cut(s)	264, 543
MspCI	CTTAAG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	415, 507
NdeII	GATC	2 cut(s)	194, 229
NlaIII	CATG	3 cut(s)	500, 510, 602
NmeAIII	GCCGAG	1 cut(s)	417
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	602
PceI	AGGCCT	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 389
PfeI	GAWTC	3 cut(s)	380, 448, 491
PkrI	GCNGC	1 cut(s)	420
PleI	GAGTC	1 cut(s)	402
PmaCI	CACGTG	1 cut(s)	580
PmlI	CACGTG	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	402
Ppu21I	YACGTR	1 cut(s)	580
Psp124BI	GAGCTC	2 cut(s)	57, 111
Psp6I	CCWGG	1 cut(s)	75
PspCI	CACGTG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	2 cut(s)	559, 623
RsaNI	GTAC	2 cut(s)	558, 622
SacI	GAGCTC	2 cut(s)	57, 111
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	264, 543
SatI	GCNGC	1 cut(s)	419
Sau3AI	GATC	2 cut(s)	194, 229
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	4 cut(s)	57, 111, 262, 579
SetI	ASST	9 cut(s)	57, 69, 111, 284, 290, 423, 477, 559, 582
SmlI	CTYRAG	2 cut(s)	263, 283
SmoI	CTYRAG	2 cut(s)	263, 283
Sse9I	AATT	2 cut(s)	371, 512
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	3 cut(s)	60, 121, 352
SstI	GAGCTC	2 cut(s)	57, 111
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	157, 484, 541
TaiI	ACGT	2 cut(s)	559, 582
TaqI	TCGA	3 cut(s)	11, 39, 90
TasI	AATT	2 cut(s)	371, 512
TfiI	GAWTC	3 cut(s)	380, 448, 491
Tru1I	TTAA	2 cut(s)	264, 543
Tru9I	TTAA	2 cut(s)	264, 543
TscAI	CASTG	2 cut(s)	160, 618
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	3 cut(s)	25, 447, 495
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	2 cut(s)	160, 618
Vha464I	CTTAAG	1 cut(s)	263
VneI	GTGCAC	1 cut(s)	575
XceI	RCATGY	1 cut(s)	602
XmiI	GTMKAC	2 cut(s)	90, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.