AT4G23570

Protein SGT1 homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
12299749 .. 12302935
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G23570.1

Sequence Viewer

Length: 1053 bp
ATGGCGAAGGAGCTTGCTGATAAGGCTAAAGAGGCTTTCGTAGACGATGACTTCGATGTTGCTGTTGACTTGTACTCCAAAGCCATTGACTTGGATCCTAATTGCGCTGAGTTCTTCGCTGATCGTGCTCAGGCCTATATCAAACTCGAAAGCTTCACTGAGGCCGTGGCAGATGCGAACAAAGCAATTGAGTTGGATCCTTCATTGACCAAAGCTTACCTAAGAAAAGGAACTGCCTGTATGAAGCTTGAAGAGTATCGGACTGCTAAAACAGCTCTTGAAAAGGGTGCCTCTATCACGCCGAGTGAATCCAAATTTAAGAAGTTGATAGATGAATGCAATTTTCTAATCACAGAAGAAGAGAAAGATTTGGTTCAACCGGTGCCTTCGACTTTGCCTTCAAGTGTGACAGCACCACCAGTATCTGAACTTGATGTCACCCCTACAGCCAAGTACAGGCACGAGTACTACCAAAAGCCAGAGGAAGTTGTGGTAACTGTTTTTGCAAAAGGAATACCCAAGCAGAATGTTAACATCGACTTTGGTGAACAAATTCTGAGTGTTGTGATTGAGGTTCCTGGAGAGGATGCGTATTATCTCCAACCGAGATTGTTTGGAAAGATAATACCAGATAAGTGCAAATATGAAGTATTGTCGACCAAAATTGAGATCTGTCTTGCAAAAGCCGATATAATCACATGGGCCTCCCTCGAACACGGCAAAGGGCCAGCGGTTTTGCCAAAGCCTAATGTCTCATCAGAGGTTTCACAGAGGCCAGCTTATCCATCTTCTAAGAAAGTTAAGGACTGGGACAAGCTGGAAGCTGAAGTGAAGAAGCAGGAAAAAGATGAGAAGCTGGAAGGAGACGCAGCTTTGAACAAATTCTTCCGGGAGATATACCAGAATGCGGATGAGGATATGAGGCGAGCGATGAGCAAATCATTTGTGGAATCGAATGGGACAGTGCTGTCAACAAACTGGCAAGAGGTTGGGACTAAGACAATCGAGAGTACTCCTCCGGATGGCATGGAGCTCAAGAAATGGGAGATCTGA

Protein Analysis

350

Amino Acids

39.22

Weight (kDa)

4.93

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 7 - 68 2.6e-06 Tetratricopeptide repeat
CS PF04969 153 - 228 4e-13 CS domain
SGS PF05002 268 - 348 8.6e-36 SGS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 967
AccB1I GGYRCC 2 cut(s) 287, 382
AccI GTMKAC 2 cut(s) 42, 656
AccIII TCCGGA 1 cut(s) 1018
AciI CCGC 2 cut(s) 731, 908
AclWI GGATC 4 cut(s) 89, 102, 191, 204
AcsI RAATTY 3 cut(s) 314, 552, 881
AcuI CTGAAG 1 cut(s) 846
AfaI GTAC 4 cut(s) 74, 455, 467, 1012
AfiI CCNNNNNNNGG 3 cut(s) 456, 907, 1022
AgeI ACCGGT 1 cut(s) 379
AgsI TTSAA 5 cut(s) 251, 281, 377, 402, 877
AjnI CCWGG 1 cut(s) 577
Alw21I GWGCWC 2 cut(s) 130, 1035
Alw26I GTCTC 2 cut(s) 757, 858
AlwI GGATC 4 cut(s) 89, 102, 191, 204
AlwNI CAGNNNCTG 1 cut(s) 425
Aor13HI TCCGGA 1 cut(s) 1018
AoxI GGCC 5 cut(s) 132, 162, 702, 725, 773
ApeKI GCWGC 1 cut(s) 869
ApoI RAATTY 3 cut(s) 314, 552, 881
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AsiGI ACCGGT 1 cut(s) 379
Asp700I GAANNNNTTC 2 cut(s) 552, 881
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 702, 725
AsuC2I CCSGG 1 cut(s) 890
AsuHPI GGTGA 2 cut(s) 430, 557
BamHI GGATCC 2 cut(s) 94, 196
BanI GGYRCC 2 cut(s) 287, 382
BanII GRGCYC 1 cut(s) 1035
BauI CACGAG 1 cut(s) 461
Bbv12I GWGCWC 2 cut(s) 130, 1035
BbvI GCAGC 1 cut(s) 881
BccI CCATC 2 cut(s) 793, 1016
BceAI ACGGC 2 cut(s) 149, 733
BciT130I CCWGG 1 cut(s) 579
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 2 cut(s) 757, 858
BfmI CTRYAG 1 cut(s) 444
BglII AGATCT 2 cut(s) 669, 1047
BisI GCNGC 1 cut(s) 870
BlsI GCNGC 1 cut(s) 871
BmcAI AGTACT 2 cut(s) 467, 1012
Bme1390I CCNGG 2 cut(s) 579, 890
BmgT120I GGNCC 2 cut(s) 702, 725
BmiI GGNNCC 5 cut(s) 96, 198, 289, 384, 576
BmrFI CCNGG 2 cut(s) 579, 890
BmrI ACTGGG 1 cut(s) 817
BmsI GCATC 2 cut(s) 163, 577
BmuI ACTGGG 1 cut(s) 817
BplI GAGNNNNNCTC 2 cut(s) 1000, 1032
BpmI CTGGAG 1 cut(s) 600
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 1019
BpuMI CCSGG 1 cut(s) 890
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 2 cut(s) 379, 1018
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 3 cut(s) 456, 907, 1022
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 3 cut(s) 419, 812, 983
BseAI TCCGGA 1 cut(s) 1018
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 3 cut(s) 592, 916, 1027
BseLI CCNNNNNNNGG 3 cut(s) 456, 907, 1022
BseMII CTCAG 4 cut(s) 99, 143, 150, 548
BseNI ACTGG 3 cut(s) 419, 812, 983
BseRI GAGGAG 1 cut(s) 1005
BseXI GCAGC 1 cut(s) 881
BshFI GGCC 5 cut(s) 134, 164, 704, 727, 775
BshNI GGYRCC 2 cut(s) 287, 382
BshTI ACCGGT 1 cut(s) 379
BsiHKAI GWGCWC 2 cut(s) 130, 1035
BsiSI CCGG 3 cut(s) 380, 889, 1019
BslFI GGGAC 3 cut(s) 824, 973, 1006
BslI CCNNNNNNNGG 3 cut(s) 456, 907, 1022
BsmAI GTCTC 2 cut(s) 757, 858
BsmBI CGTCTC 1 cut(s) 858
BsmFI GGGAC 3 cut(s) 824, 973, 1006
BsmI GAATGC 2 cut(s) 341, 910
BsnI GGCC 5 cut(s) 134, 164, 704, 727, 775
Bsp1286I GDGCHC 2 cut(s) 130, 1035
Bsp13I TCCGGA 1 cut(s) 1018
Bsp143I GATC 5 cut(s) 94, 121, 196, 669, 1047
BspACI CCGC 2 cut(s) 731, 908
BspANI GGCC 5 cut(s) 134, 164, 704, 727, 775
BspCNI CTCAG 4 cut(s) 100, 142, 151, 549
BspEI TCCGGA 1 cut(s) 1018
BspLI GGNNCC 5 cut(s) 96, 198, 289, 384, 576
BspPI GGATC 4 cut(s) 89, 102, 191, 204
BspT107I GGYRCC 2 cut(s) 287, 382
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 3 cut(s) 419, 812, 983
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 5 cut(s) 94, 121, 196, 669, 1047
BssSI CACGAG 1 cut(s) 461
Bst2BI CACGAG 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 2 cut(s) 499, 964
Bst6I CTCTTC 2 cut(s) 246, 354
BstC8I GCNNGC 4 cut(s) 15, 729, 777, 927
BstDEI CTNAG 7 cut(s) 108, 129, 159, 221, 557, 792, 996
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 3 cut(s) 592, 916, 1027
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 5 cut(s) 97, 124, 199, 672, 1050
BstMAI GTCTC 2 cut(s) 757, 858
BstMBI GATC 5 cut(s) 94, 121, 196, 669, 1047
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 125, 182, 272
BstNI CCWGG 1 cut(s) 579
BstSCI CCNGG 2 cut(s) 577, 888
BstSFI CTRYAG 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 881
BstX2I RGATCY 4 cut(s) 94, 196, 669, 1047
BstXI CCANNNNNNTGG 1 cut(s) 91
BstYI RGATCY 4 cut(s) 94, 196, 669, 1047
BsuRI GGCC 5 cut(s) 134, 164, 704, 727, 775
BtgI CCRYGG 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 944
BtsCI GGATG 3 cut(s) 592, 916, 1027
BtsIMutI CAGTG 2 cut(s) 156, 969
Cac8I GCNNGC 4 cut(s) 15, 729, 777, 927
CaiI CAGNNNCTG 1 cut(s) 425
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 702, 725
CseI GACGC 1 cut(s) 875
Csp6I GTAC 4 cut(s) 73, 454, 466, 1011
CspAI ACCGGT 1 cut(s) 379
CviAII CATG 2 cut(s) 699, 1027
CviQI GTAC 4 cut(s) 73, 454, 466, 1011
DdeI CTNAG 7 cut(s) 108, 129, 159, 221, 557, 792, 996
DpnI GATC 5 cut(s) 96, 123, 198, 671, 1049
DpnII GATC 5 cut(s) 94, 121, 196, 669, 1047
DrdI GACNNNNNNGTC 1 cut(s) 967
DseDI GACNNNNNNGTC 1 cut(s) 967
Eam1104I CTCTTC 2 cut(s) 246, 354
EarI CTCTTC 2 cut(s) 246, 354
Ecl136II GAGCTC 1 cut(s) 1033
Eco147I AGGCCT 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 1035
Eco53kI GAGCTC 1 cut(s) 1033
Eco57I CTGAAG 1 cut(s) 846
EcoICRI GAGCTC 1 cut(s) 1033
EcoRII CCWGG 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 1035
Esp3I CGTCTC 1 cut(s) 858
FaeI CATG 2 cut(s) 702, 1030
FaiI YATR 8 cut(s) 138, 242, 645, 692, 700, 898, 920, 1028
FaqI GGGAC 3 cut(s) 824, 973, 1006
FatI CATG 2 cut(s) 698, 1026
FblI GTMKAC 2 cut(s) 42, 656
Fnu4HI GCNGC 1 cut(s) 870
FokI GGATG 3 cut(s) 599, 923, 1034
FriOI GRGCYC 1 cut(s) 1035
Fsp4HI GCNGC 1 cut(s) 870
GlaI GCGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 870
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 5 cut(s) 134, 164, 704, 727, 775
HapII CCGG 3 cut(s) 380, 889, 1019
HgaI GACGC 1 cut(s) 875
HhaI GCGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 702, 1030
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 4 cut(s) 67, 532, 657, 972
HindII GTYRAC 4 cut(s) 67, 532, 657, 972
HindIII AAGCTT 3 cut(s) 151, 213, 245
HinfI GANTC 2 cut(s) 308, 950
HpaI GTTAAC 1 cut(s) 532
HpaII CCGG 3 cut(s) 380, 889, 1019
HphI GGTGA 2 cut(s) 430, 557
Hpy166II GTNNAC 6 cut(s) 43, 67, 532, 548, 657, 972
Hpy188I TCNGA 5 cut(s) 261, 427, 558, 760, 1052
Hpy188III TCNNGA 4 cut(s) 278, 1006, 1019, 1036
Hpy8I GTNNAC 6 cut(s) 43, 67, 532, 548, 657, 972
HpyAV CCTTC 4 cut(s) 210, 396, 408, 854
HpyCH4III ACNGT 2 cut(s) 499, 964
HpyCH4V TGCA 4 cut(s) 339, 506, 639, 680
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 125, 182, 272
HpyF3I CTNAG 7 cut(s) 108, 129, 159, 221, 557, 792, 996
Hsp92II CATG 2 cut(s) 702, 1030
HspAI GCGC 1 cut(s) 105
Kpn2I TCCGGA 1 cut(s) 1018
KspAI GTTAAC 1 cut(s) 532
Kzo9I GATC 5 cut(s) 94, 121, 196, 669, 1047
LmnI GCTCC 2 cut(s) 10, 1030
Lsp1109I GCAGC 1 cut(s) 881
LweI GCATC 2 cut(s) 163, 577
MaeIII GTNAC 3 cut(s) 406, 436, 493
MalI GATC 5 cut(s) 96, 123, 198, 671, 1049
MboI GATC 5 cut(s) 94, 121, 196, 669, 1047
MboII GAAGA 7 cut(s) 106, 263, 368, 371, 780, 844, 877
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 4 cut(s) 94, 196, 669, 1047
MhlI GDGCHC 2 cut(s) 130, 1035
MluCI AATT 7 cut(s) 100, 186, 314, 340, 552, 663, 881
MmeI TCCRAC 2 cut(s) 174, 625
MroI TCCGGA 1 cut(s) 1018
MroXI GAANNNNTTC 2 cut(s) 552, 881
MseI TTAA 3 cut(s) 318, 531, 801
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 3 cut(s) 380, 889, 1019
MspR9I CCNGG 2 cut(s) 579, 890
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 2 cut(s) 341, 910
MvaI CCWGG 1 cut(s) 579
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 125, 182, 272
NciI CCSGG 1 cut(s) 890
NdeII GATC 5 cut(s) 94, 121, 196, 669, 1047
NlaIII CATG 2 cut(s) 702, 1030
NlaIV GGNNCC 5 cut(s) 96, 198, 289, 384, 576
NmeAIII GCCGAG 1 cut(s) 327
NmuCI GTSAC 2 cut(s) 406, 436
PceI AGGCCT 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 2 cut(s) 341, 910
PdmI GAANNNNTTC 2 cut(s) 552, 881
PfeI GAWTC 2 cut(s) 308, 950
PfoI TCCNGGA 2 cut(s) 577, 888
PinAI ACCGGT 1 cut(s) 379
PkrI GCNGC 1 cut(s) 871
Psp124BI GAGCTC 1 cut(s) 1035
Psp6I CCWGG 1 cut(s) 577
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 5 cut(s) 96, 198, 289, 384, 576
PspPI GGNCC 2 cut(s) 702, 725
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 4 cut(s) 94, 196, 669, 1047
RsaI GTAC 4 cut(s) 74, 455, 467, 1012
RsaNI GTAC 4 cut(s) 73, 454, 466, 1011
SacI GAGCTC 1 cut(s) 1035
SalI GTCGAC 1 cut(s) 655
SaqAI TTAA 3 cut(s) 318, 531, 801
SatI GCNGC 1 cut(s) 870
Sau3AI GATC 5 cut(s) 94, 121, 196, 669, 1047
Sau96I GGNCC 2 cut(s) 702, 725
ScaI AGTACT 2 cut(s) 467, 1012
ScrFI CCNGG 2 cut(s) 579, 890
SduI GDGCHC 2 cut(s) 130, 1035
SfaNI GCATC 2 cut(s) 163, 577
SfcI CTRYAG 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 1034
SmoI CTYRAG 1 cut(s) 1034
Sse9I AATT 7 cut(s) 100, 186, 314, 340, 552, 663, 881
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 2 cut(s) 731, 908
SstI GAGCTC 1 cut(s) 1035
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 577, 888
TaaI ACNGT 2 cut(s) 499, 964
TaqI TCGA 8 cut(s) 54, 147, 389, 537, 656, 711, 953, 1005
TasI AATT 7 cut(s) 100, 186, 314, 340, 552, 663, 881
TatI WGTACW 4 cut(s) 72, 453, 465, 1010
TfiI GAWTC 2 cut(s) 308, 950
Tru1I TTAA 3 cut(s) 318, 531, 801
Tru9I TTAA 3 cut(s) 318, 531, 801
TscAI CASTG 2 cut(s) 163, 969
TseFI GTSAC 2 cut(s) 406, 436
TseI GCWGC 1 cut(s) 869
Tsp45I GTSAC 2 cut(s) 406, 436
TspDTI ATGAA 4 cut(s) 192, 257, 348, 660
TspRI CASTG 2 cut(s) 163, 969
XapI RAATTY 3 cut(s) 314, 552, 881
XmiI GTMKAC 2 cut(s) 42, 656
XmnI GAANNNNTTC 2 cut(s) 552, 881
ZrmI AGTACT 2 cut(s) 467, 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.