Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Forward (+)

51760773 .. 51764962

Gene Structure 4190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG391300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAAACAACCACTACAGAGAGTGTTACAGCCGCAAAAGATGTTGAGCCAGTAAACCTGCTTTCCGATCAGGTGACAGTAGCACCTGTCAAACCAAAATACAGGCATGAATTCTACCAGAAGCCTGAAGAAGTGGCCGTGACTATATTGGCAAAGGGCATACCAGCCAAAGATGTTGCTGTTGAATTTGGTGAACAAATATTAAGTGTCAGCATTGATGTTCCTGGTGAAGATACATATCATTTTCAGCCTCGCCTGTTTGGGAAGATCATTCCTGAAAAGTGCAGATTTGAAGTTTTGTCAACCAAGGTTGAAATTCGCCTGGCCAAAGCTGAAGCCATACAGTGGACATCTCTTGAGTTCAGCAAGGATAACCCTGTTCCTCTAAAGGTCAATGCCCCAGTTATTGGAGCCCAAAGGCCATCTTACCCATCCTCCAAACCAAAGCGGGTAGATTGGGACAAGCTCGAAGCCGAAGTGAAGAAGGAGGAGAAAGATGAGAAGCTTGATGGCGATGCAGCTTTGAACAAATTTTTCCAAGACATATACAAGGATGCTGATGAGGACACAAGAAGGGCCATGAGAAAATCTTTTGTAAGACACTCCTTTCTAGTGTTTGATACCAAAATGGAAACTCTTCATTCTTGTAAAATTTTTAGTTGTGATTTGAAGGTTGCCATGAAAATATCTTTTGTAAGACACTCCTTTCTAGTGTTTGATACCACAATAGAAACTATAATCTGGTGGAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

251

Amino Acids

28.79

Weight (kDa)

6.26

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	35 - 110	6.5e-12	CS domain
SGS	PF05002	152 - 201	2e-16	SGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	66
AccB7I	CCANNNNNTGG	2 cut(s)	345, 407
AciI	CCGC	2 cut(s)	33, 448
AcoI	YGGCCR	2 cut(s)	135, 324
AcsI	RAATTY	5 cut(s)	110, 185, 315, 530, 651
AcuI	CTGAAG	2 cut(s)	147, 354
AfaI	GTAC	1 cut(s)	752
AfiI	CCNNNNNNNGG	2 cut(s)	345, 407
AgsI	TTSAA	5 cut(s)	185, 293, 314, 526, 670
AjnI	CCWGG	2 cut(s)	223, 321
AluBI	AGCT	4 cut(s)	332, 466, 505, 521
AluI	AGCT	4 cut(s)	332, 466, 505, 521
AoxI	GGCC	4 cut(s)	135, 324, 419, 576
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	5 cut(s)	110, 185, 315, 530, 651
Asp700I	GAANNNNTTC	1 cut(s)	636
AspS9I	GGNCC	1 cut(s)	576
AsuHPI	GGTGA	3 cut(s)	85, 203, 239
BalI	TGGCCA	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	530
BccI	CCATC	3 cut(s)	430, 439, 503
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	2 cut(s)	225, 323
BfaI	CTAG	3 cut(s)	611, 710, 754
BfmI	CTRYAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	66
BisI	GCNGC	2 cut(s)	33, 519
BlsI	GCNGC	2 cut(s)	34, 520
BmcAI	AGTACT	1 cut(s)	752
Bme1390I	CCNGG	2 cut(s)	225, 323
BmgT120I	GGNCC	1 cut(s)	576
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	2 cut(s)	225, 323
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	505, 544
BmuI	ACTGGG	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 407
Bse1I	ACTGG	2 cut(s)	50, 401
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	225, 323
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	431, 559
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	345, 407
BseNI	ACTGG	2 cut(s)	50, 401
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	304
BshFI	GGCC	4 cut(s)	137, 326, 421, 578
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	2 cut(s)	345, 407
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	4 cut(s)	137, 326, 421, 578
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	2 cut(s)	67, 267
BspACI	CCGC	2 cut(s)	33, 448
BspANI	GGCC	4 cut(s)	137, 326, 421, 578
BspLI	GGNNCC	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	50, 401
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	67, 267
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	2 cut(s)	225, 323
Bst4CI	ACNGT	2 cut(s)	79, 345
Bst6I	CTCTTC	1 cut(s)	642
BstF5I	GGATG	2 cut(s)	431, 559
BstKTI	GATC	2 cut(s)	70, 270
BstMBI	GATC	2 cut(s)	67, 267
BstNI	CCWGG	2 cut(s)	225, 323
BstSCI	CCNGG	2 cut(s)	223, 321
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	530
BsuRI	GGCC	4 cut(s)	137, 326, 421, 578
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	431, 559
BtsIMutI	CAGTG	1 cut(s)	350
BveI	ACCTGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	576
Csp6I	GTAC	1 cut(s)	751
CviAII	CATG	3 cut(s)	107, 580, 679
CviQI	GTAC	1 cut(s)	751
DpnI	GATC	2 cut(s)	69, 269
DpnII	GATC	2 cut(s)	67, 267
EaeI	YGGCCR	2 cut(s)	135, 324
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	147, 354
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	223, 321
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	3 cut(s)	110, 583, 682
FalI	AAGNNNNNCTT	2 cut(s)	409, 441
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	3 cut(s)	106, 579, 678
FauI	CCCGC	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	33, 519
FokI	GGATG	2 cut(s)	418, 566
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	2 cut(s)	33, 519
FspBI	CTAG	3 cut(s)	611, 710, 754
GluI	GCNGC	2 cut(s)	33, 519
HaeIII	GGCC	4 cut(s)	137, 326, 421, 578
Hin1II	CATG	3 cut(s)	110, 583, 682
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	503
HphI	GGTGA	3 cut(s)	85, 203, 239
Hpy166II	GTNNAC	4 cut(s)	55, 194, 303, 348
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	275, 356
Hpy8I	GTNNAC	4 cut(s)	55, 194, 303, 348
HpyAV	CCTTC	3 cut(s)	478, 567, 664
HpyCH4III	ACNGT	2 cut(s)	79, 345
HpyCH4V	TGCA	2 cut(s)	285, 518
Hsp92II	CATG	3 cut(s)	110, 583, 682
Kzo9I	GATC	2 cut(s)	67, 267
LmnI	GCTCC	1 cut(s)	410
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	2 cut(s)	505, 544
MaeI	CTAG	3 cut(s)	611, 710, 754
MaeIII	GTNAC	3 cut(s)	25, 73, 139
MalI	GATC	2 cut(s)	69, 269
MboI	GATC	2 cut(s)	67, 267
MboII	GAAGA	5 cut(s)	140, 242, 277, 493, 629
MhlI	GDGCHC	1 cut(s)	415
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	5 cut(s)	110, 185, 315, 530, 651
MluNI	TGGCCA	1 cut(s)	326
MnlI	CCTC	5 cut(s)	261, 393, 445, 481, 556
Mox20I	TGGCCA	1 cut(s)	326
MroXI	GAANNNNTTC	1 cut(s)	636
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	225, 323
MvaI	CCWGG	2 cut(s)	225, 323
NdeII	GATC	2 cut(s)	67, 267
NlaIII	CATG	3 cut(s)	110, 583, 682
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	2 cut(s)	73, 139
PdmI	GAANNNNTTC	1 cut(s)	636
PflMI	CCANNNNNTGG	2 cut(s)	345, 407
PkrI	GCNGC	2 cut(s)	34, 520
Psp6I	CCWGG	2 cut(s)	223, 321
PspGI	CCWGG	2 cut(s)	223, 321
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	576
RsaI	GTAC	1 cut(s)	752
RsaNI	GTAC	1 cut(s)	751
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	2 cut(s)	33, 519
Sau3AI	GATC	2 cut(s)	67, 267
Sau96I	GGNCC	1 cut(s)	576
ScaI	AGTACT	1 cut(s)	752
ScrFI	CCNGG	2 cut(s)	225, 323
SduI	GDGCHC	1 cut(s)	415
SfaNI	GCATC	2 cut(s)	505, 544
SfcI	CTRYAG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	5 cut(s)	110, 185, 315, 530, 651
SsiI	CCGC	2 cut(s)	33, 448
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	3 cut(s)	611, 710, 754
StyD4I	CCNGG	2 cut(s)	223, 321
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	79, 345
TaqI	TCGA	1 cut(s)	468
TasI	AATT	5 cut(s)	110, 185, 315, 530, 651
TatI	WGTACW	1 cut(s)	750
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	350
TseFI	GTSAC	2 cut(s)	73, 139
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	2 cut(s)	73, 139
TspDTI	ATGAA	3 cut(s)	123, 629, 695
TspRI	CASTG	1 cut(s)	350
Van91I	CCANNNNNTGG	2 cut(s)	345, 407
XapI	RAATTY	5 cut(s)	110, 185, 315, 530, 651
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	3 cut(s)	611, 710, 754
ZrmI	AGTACT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.