Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

22639907 .. 22641229

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGTTATTCGATCTGGGAAATAGCGAAGGCCTTCATCGACGACCACTCCGAGCTCACCGCTAACCTCTACACCCAGGCCATCGTCATCGACCCCAACAACTCCGAGCTCTACTCCGACCGCACTCAGGCCAACATCAAATGCAACAATCTCAATGGTGGATTAGAGTTGGAATTTTTGATCAGAAAGTTGGAAATTGAGGCCAGTCTCAGTGTCGTTCAAACTCTGACTAACCGCAAAGAGGAGTTCTGTAAATTGCTTGAATCGTATAAGCCGAGTCTTGTATACTTGCAAGGAGAGCAGCTTGAAAATTATGAACTTGGTTCTTGTGTCTGGAGAGATGTTGATTTGCCAACTGCTGAATCTATATCCAACATCTTTCCACATTGCCTACAATTGTGTACTGCAGATTGCTCCATTTCATTTCCCTGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID

Protein Analysis

146

Amino Acids

16.55

Weight (kDa)

4.45

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	3 cut(s)	60, 121, 235
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	2 cut(s)	127, 241
AgsI	TTSAA	3 cut(s)	221, 263, 308
AjnI	CCWGG	2 cut(s)	75, 428
AluBI	AGCT	3 cut(s)	55, 109, 304
AluI	AGCT	3 cut(s)	55, 109, 304
Alw21I	GWGCWC	2 cut(s)	57, 111
Alw26I	GTCTC	1 cut(s)	212
AoxI	GGCC	4 cut(s)	30, 78, 129, 201
ApeKI	GCWGC	1 cut(s)	301
ApoI	RAATTY	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	49
BanII	GRGCYC	2 cut(s)	57, 111
Bbv12I	GWGCWC	2 cut(s)	57, 111
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	2 cut(s)	77, 430
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	405
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
Bme1390I	CCNGG	2 cut(s)	77, 430
BmrFI	CCNGG	2 cut(s)	77, 430
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpmI	CTGGAG	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	75, 428
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 241
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	77, 430
BseDI	CCNNGG	2 cut(s)	75, 428
BseLI	CCNNNNNNNGG	2 cut(s)	127, 241
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	140, 223
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	313
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	4 cut(s)	32, 80, 131, 203
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	2 cut(s)	57, 111
BslI	CCNNNNNNNGG	2 cut(s)	127, 241
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	4 cut(s)	32, 80, 131, 203
Bsp1286I	GDGCHC	2 cut(s)	57, 111
Bsp143I	GATC	2 cut(s)	12, 180
BspACI	CCGC	3 cut(s)	60, 121, 235
BspANI	GGCC	4 cut(s)	32, 80, 131, 203
BspCNI	CTCAG	2 cut(s)	139, 222
BspMAI	CTGCAG	1 cut(s)	409
BsrDI	GCAATG	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	75, 428
BssMI	GATC	2 cut(s)	12, 180
BssNAI	GTATAC	1 cut(s)	286
Bst1107I	GTATAC	1 cut(s)	286
Bst2UI	CCWGG	2 cut(s)	77, 430
BstDEI	CTNAG	2 cut(s)	126, 209
BstKTI	GATC	2 cut(s)	15, 183
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	2 cut(s)	12, 180
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	2 cut(s)	77, 430
BstSCI	CCNGG	2 cut(s)	75, 428
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	313
BstZ17I	GTATAC	1 cut(s)	286
BsuRI	GGCC	4 cut(s)	32, 80, 131, 203
BtsIMutI	CAGTG	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	402
CviJI	RGCY	8 cut(s)	32, 55, 80, 109, 131, 203, 274, 304
CviKI_1	RGCY	8 cut(s)	32, 55, 80, 109, 131, 203, 274, 304
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	2 cut(s)	126, 209
DpnI	GATC	2 cut(s)	14, 182
DpnII	GATC	2 cut(s)	12, 180
Ecl136II	GAGCTC	2 cut(s)	55, 109
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	57, 111
Eco53kI	GAGCTC	2 cut(s)	55, 109
EcoICRI	GAGCTC	2 cut(s)	55, 109
EcoRII	CCWGG	2 cut(s)	75, 428
EcoT38I	GRGCYC	2 cut(s)	57, 111
FaiI	YATR	4 cut(s)	270, 286, 315, 368
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	302
FriOI	GRGCYC	2 cut(s)	57, 111
Fsp4HI	GCNGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	355
HaeIII	GGCC	4 cut(s)	32, 80, 131, 203
HinfI	GANTC	3 cut(s)	263, 277, 362
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	286, 402
Hpy188I	TCNGA	5 cut(s)	52, 106, 118, 185, 228
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	2 cut(s)	286, 402
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	22, 43
HpyCH4V	TGCA	3 cut(s)	144, 292, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	2 cut(s)	126, 209
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	12, 180
LmnI	GCTCC	1 cut(s)	419
LpnPI	CCDG	6 cut(s)	62, 89, 113, 217, 319, 415
Lsp1109I	GCAGC	1 cut(s)	313
MalI	GATC	2 cut(s)	14, 182
MboI	GATC	2 cut(s)	12, 180
MfeI	CAATTG	1 cut(s)	395
MhlI	GDGCHC	2 cut(s)	57, 111
MluCI	AATT	5 cut(s)	173, 195, 254, 310, 395
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	4 cut(s)	141, 150, 171, 396
MnlI	CCTC	3 cut(s)	77, 193, 235
MroXI	GAANNNNTTC	1 cut(s)	32
MspR9I	CCNGG	2 cut(s)	77, 430
MunI	CAATTG	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	77, 430
MwoI	GCNNNNNNNGC	1 cut(s)	298
NdeII	GATC	2 cut(s)	12, 180
NmeAIII	GCCGAG	1 cut(s)	300
PceI	AGGCCT	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 272
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	263, 362
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
Psp124BI	GAGCTC	2 cut(s)	57, 111
Psp6I	CCWGG	2 cut(s)	75, 428
PspGI	CCWGG	2 cut(s)	75, 428
PstI	CTGCAG	1 cut(s)	409
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SacI	GAGCTC	2 cut(s)	57, 111
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	2 cut(s)	12, 180
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	2 cut(s)	77, 430
SduI	GDGCHC	2 cut(s)	57, 111
SetI	ASST	4 cut(s)	57, 69, 111, 306
SfcI	CTRYAG	1 cut(s)	405
Sse9I	AATT	5 cut(s)	173, 195, 254, 310, 395
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	3 cut(s)	60, 121, 235
SstI	GAGCTC	2 cut(s)	57, 111
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	75, 428
TaqI	TCGA	3 cut(s)	11, 39, 90
TasI	AATT	5 cut(s)	173, 195, 254, 310, 395
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	2 cut(s)	263, 362
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	25, 330, 411
TspRI	CASTG	1 cut(s)	217
XapI	RAATTY	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.