Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Forward (+)

25798422 .. 25801204

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25520.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGACTTCCGATCTGGAAAAGAGTGCCAAGGAGGCGTTCATCGACGACCACTTCGAGTTGGCCGTTGACCTCTACACCCAGGCCATCGCTCTCAACCCTCAGAGCGCCGAGCTCTACTCCGACCGCGCGCAGGCCAACATCAAATCCGGCAATCTCACTGGGGCTGTTGCGGATGCGAACAAGGCAATTGAGTTCGATCCATTACTGTACAAAGCGTATTTGCGCAAAGGAATTGCCTGCATCAAGCTCGAGGAATATGAGACTGCAAAGGCAACCCTGGAAATTGGTGCTCCTCTGGCCCCGCATGAGACAAGATTCGCTGAATTGATAAAAGAGTGTGATGAGAAAATTGCAGAGGAAACTGGTGTTCTACCAACATCTTCGTTGGAGAAAAACATGACAGAGAATGTTATATTTGCAGAAGATGTTCAGCCTGTGAGTCAACCTTCCAATCAGGTGACCGTAGCAACTGTCAAACCAAAATACAGGCATGAATTCTACCAGAAGCCAGAAGAAGTGGTTGTGACCATATTCGCCAAGGGCATACCAGCCAAAGATGTTAATGTTGACTTTGGTGAACAAATACTAAGTGTTAGTATTGATGTCGCTGGTGAAGATACGTATCATTTTCAGCCTCGTTTATTTGCGAAGATAATACCTGAAAAGTGTAGATTTGACGTTCTGTCCACCAAAGTTGAAATTCGCTTGGCTAAAATTGAACCATTAAACTGGACATCTCTTGAATTCAGCAAGGACGTTCCACAAAGGGTCAGTGGCCCAGTTGTTTTAGCGCCAAGGCCATCCTACCCATCCTCGAAACCAAAAAGGGTCGACTGGGATAAGCTGGAGGCCCAAGTGAAGAAGGAGGAAAAAGAAGAGAAGCTTGATGGTGATGCAGCTTTGAACAAATTTTTCCAAGACATATACAAGGATGCTGATGAGGACACAAGAAGGGCCATGAGAAAATCTTTTGTGGAGTCGAACGGGACAGTGCTTTCGACAAACTGGAAAGAAGTGGGAAACAAAAAGGTTGAGGGAAGTGCTCCGGACGGCATGGAGATGAAGAAATGGGAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

360

Amino Acids

40.36

Weight (kDa)

5.07

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	831
AccII	CGCG	2 cut(s)	126, 128
AccIII	TCCGGA	1 cut(s)	1045
AciI	CCGC	3 cut(s)	124, 170, 302
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	4 cut(s)	494, 699, 743, 908
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	4 cut(s)	698, 719, 743, 904
AhdI	GACNNNNNGTC	1 cut(s)	682
AjnI	CCWGG	2 cut(s)	78, 276
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	5 cut(s)	112, 247, 844, 883, 899
AluI	AGCT	5 cut(s)	112, 247, 844, 883, 899
Alw21I	GWGCWC	3 cut(s)	114, 292, 1045
Alw26I	GTCTC	2 cut(s)	254, 302
AlwI	GGATC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	248
Aor13HI	TCCGGA	1 cut(s)	1045
AoxI	GGCC	8 cut(s)	60, 81, 132, 297, 775, 797, 849, 954
ApeKI	GCWGC	1 cut(s)	896
ApoI	RAATTY	4 cut(s)	494, 699, 743, 908
ArsI	GACNNNNNNTTYG	4 cut(s)	35, 67, 979, 1011
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	5 cut(s)	107, 128, 130, 225, 793
AspS9I	GGNCC	4 cut(s)	298, 776, 850, 954
AsuHPI	GGTGA	4 cut(s)	469, 587, 623, 902
AvaI	CYCGRG	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	3 cut(s)	114, 292, 1045
BbvI	GCAGC	1 cut(s)	908
BccI	CCATC	4 cut(s)	92, 808, 817, 881
BceAI	ACGGC	2 cut(s)	47, 1066
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	2 cut(s)	80, 278
BcoDI	GTCTC	2 cut(s)	254, 302
BfaI	CTAG	1 cut(s)	1078
BfoI	RGCGCY	2 cut(s)	108, 794
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	897
BlsI	GCNGC	1 cut(s)	898
Bme1390I	CCNGG	2 cut(s)	80, 278
BmeRI	GACNNNNNGTC	1 cut(s)	682
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	4 cut(s)	298, 776, 850, 954
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	80, 278
BmrI	ACTGGG	3 cut(s)	168, 773, 844
BmsI	GCATC	4 cut(s)	163, 249, 883, 922
BmuI	ACTGGG	3 cut(s)	168, 773, 844
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpmI	CTGGAG	1 cut(s)	866
BsaAI	YACGTR	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	621
BsaJI	CCNNGG	5 cut(s)	27, 78, 276, 537, 794
BsaWI	WCCGGW	1 cut(s)	1045
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	6 cut(s)	163, 367, 734, 779, 839, 1010
Bse8I	GATNNNNATC	1 cut(s)	621
BseAI	TCCGGA	1 cut(s)	1045
BseBI	CCWGG	2 cut(s)	80, 278
BseDI	CCNNGG	5 cut(s)	27, 78, 276, 537, 794
BseGI	GGATG	4 cut(s)	178, 800, 809, 937
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	6 cut(s)	163, 367, 734, 779, 839, 1010
BsePI	GCGCGC	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	908
Bsh1236I	CGCG	2 cut(s)	126, 128
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	8 cut(s)	62, 83, 134, 299, 777, 799, 851, 956
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	3 cut(s)	114, 292, 1045
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	147, 1046
BslFI	GGGAC	1 cut(s)	1000
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	2 cut(s)	254, 302
BsmFI	GGGAC	1 cut(s)	1000
BsnI	GGCC	8 cut(s)	62, 83, 134, 299, 777, 799, 851, 956
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	3 cut(s)	114, 292, 1045
Bsp13I	TCCGGA	1 cut(s)	1045
Bsp1407I	TGTACA	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	10, 196
BspACI	CCGC	3 cut(s)	124, 170, 302
BspANI	GGCC	8 cut(s)	62, 83, 134, 299, 777, 799, 851, 956
BspCNI	CTCAG	1 cut(s)	112
BspEI	TCCGGA	1 cut(s)	1045
BspFNI	CGCG	2 cut(s)	126, 128
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	191
BsrGI	TGTACA	1 cut(s)	207
BsrI	ACTGG	6 cut(s)	163, 367, 734, 779, 839, 1010
BssECI	CCNNGG	5 cut(s)	27, 78, 276, 537, 794
BssHII	GCGCGC	1 cut(s)	126
BssMI	GATC	2 cut(s)	10, 196
BssT1I	CCWWGG	3 cut(s)	27, 537, 794
Bst2UI	CCWGG	2 cut(s)	80, 278
Bst4CI	ACNGT	4 cut(s)	207, 463, 472, 991
Bst6I	CTCTTC	1 cut(s)	870
BstAUI	TGTACA	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	621
BstC8I	GCNNGC	3 cut(s)	128, 132, 238
BstDEI	CTNAG	2 cut(s)	99, 587
BstEII	GGTNACC	1 cut(s)	457
BstF5I	GGATG	4 cut(s)	178, 800, 809, 937
BstFNI	CGCG	2 cut(s)	126, 128
BstH2I	RGCGCY	2 cut(s)	108, 794
BstHHI	GCGC	5 cut(s)	107, 128, 130, 225, 793
BstKTI	GATC	2 cut(s)	13, 199
BstMAI	GTCTC	2 cut(s)	254, 302
BstMBI	GATC	2 cut(s)	10, 196
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 182, 296
BstNI	CCWGG	2 cut(s)	80, 278
BstPI	GGTNACC	1 cut(s)	457
BstSCI	CCNGG	2 cut(s)	78, 276
BstSNI	TACGTA	1 cut(s)	621
BstUI	CGCG	2 cut(s)	126, 128
BstV1I	GCAGC	1 cut(s)	908
BstXI	CCANNNNNNTGG	1 cut(s)	729
BsuRI	GGCC	8 cut(s)	62, 83, 134, 299, 777, 799, 851, 956
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	4 cut(s)	178, 800, 809, 937
BtsIMutI	CAGTG	3 cut(s)	156, 778, 996
Cac8I	GCNNGC	3 cut(s)	128, 132, 238
CfoI	GCGC	5 cut(s)	107, 128, 130, 225, 793
Cfr13I	GGNCC	4 cut(s)	298, 776, 850, 954
Csp6I	GTAC	1 cut(s)	208
CspCI	CAANNNNNGTGG	2 cut(s)	676, 711
CviAII	CATG	5 cut(s)	305, 397, 491, 958, 1054
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	99, 587
DpnI	GATC	2 cut(s)	12, 198
DpnII	GATC	2 cut(s)	10, 196
DriI	GACNNNNNGTC	1 cut(s)	682
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	870
Eam1105I	GACNNNNNGTC	1 cut(s)	682
EarI	CTCTTC	1 cut(s)	870
Ecl136II	GAGCTC	1 cut(s)	112
Eco105I	TACGTA	1 cut(s)	621
Eco130I	CCWWGG	3 cut(s)	27, 537, 794
Eco24I	GRGCYC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	248
Eco91I	GGTNACC	1 cut(s)	457
EcoICRI	GAGCTC	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	457
EcoRI	GAATTC	2 cut(s)	494, 743
EcoRII	CCWGG	2 cut(s)	78, 276
EcoT14I	CCWWGG	3 cut(s)	27, 537, 794
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	3 cut(s)	27, 537, 794
FaeI	CATG	5 cut(s)	308, 400, 494, 961, 1057
FalI	AAGNNNNNCTT	2 cut(s)	867, 899
FaqI	GGGAC	1 cut(s)	1000
FatI	CATG	5 cut(s)	304, 396, 490, 957, 1053
FauI	CCCGC	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	831
Fnu4HI	GCNGC	1 cut(s)	897
FokI	GGATG	4 cut(s)	185, 787, 796, 944
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	897
FspBI	CTAG	1 cut(s)	1078
FspI	TGCGCA	1 cut(s)	224
GlaI	GCGC	5 cut(s)	106, 127, 129, 224, 792
GluI	GCNGC	1 cut(s)	897
GsuI	CTGGAG	1 cut(s)	866
HaeII	RGCGCY	2 cut(s)	108, 794
HaeIII	GGCC	8 cut(s)	62, 83, 134, 299, 777, 799, 851, 956
HapII	CCGG	2 cut(s)	147, 1046
HhaI	GCGC	5 cut(s)	107, 128, 130, 225, 793
Hin1II	CATG	5 cut(s)	308, 400, 494, 961, 1057
Hin6I	GCGC	5 cut(s)	105, 126, 128, 223, 791
HinP1I	GCGC	5 cut(s)	105, 126, 128, 223, 791
HincII	GTYRAC	4 cut(s)	67, 443, 568, 832
HindII	GTYRAC	4 cut(s)	67, 443, 568, 832
HindIII	AAGCTT	1 cut(s)	881
HinfI	GANTC	3 cut(s)	315, 439, 977
HpaII	CCGG	2 cut(s)	147, 1046
HphI	GGTGA	4 cut(s)	469, 587, 623, 902
Hpy166II	GTNNAC	6 cut(s)	67, 443, 568, 578, 687, 832
Hpy188I	TCNGA	3 cut(s)	10, 102, 121
Hpy188III	TCNNGA	3 cut(s)	14, 740, 1046
Hpy8I	GTNNAC	6 cut(s)	67, 443, 568, 578, 687, 832
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	456, 856, 945
HpyCH4III	ACNGT	4 cut(s)	207, 463, 472, 991
HpyCH4IV	ACGT	3 cut(s)	620, 678, 756
HpyCH4V	TGCA	5 cut(s)	240, 266, 353, 419, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 182, 296
HpyF3I	CTNAG	2 cut(s)	99, 587
HpySE526I	ACGT	3 cut(s)	620, 678, 756
Hsp92II	CATG	5 cut(s)	308, 400, 494, 961, 1057
HspAI	GCGC	5 cut(s)	105, 126, 128, 223, 791
Kpn2I	TCCGGA	1 cut(s)	1045
Kzo9I	GATC	2 cut(s)	10, 196
LmnI	GCTCC	2 cut(s)	295, 1048
Lsp1109I	GCAGC	1 cut(s)	908
LweI	GCATC	4 cut(s)	163, 249, 883, 922
MaeI	CTAG	1 cut(s)	1078
MaeII	ACGT	3 cut(s)	620, 678, 756
MaeIII	GTNAC	2 cut(s)	457, 523
MalI	GATC	2 cut(s)	12, 198
MboI	GATC	2 cut(s)	10, 196
MboII	GAAGA	8 cut(s)	372, 434, 524, 626, 661, 871, 887, 1075
MfeI	CAATTG	1 cut(s)	186
MhlI	GDGCHC	3 cut(s)	114, 292, 1045
MlyI	GAGTC	2 cut(s)	448, 986
MmeI	TCCRAC	2 cut(s)	144, 366
MroI	TCCGGA	1 cut(s)	1045
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	2 cut(s)	561, 725
MslI	CAYNNNNRTG	1 cut(s)	1058
MspI	CCGG	2 cut(s)	147, 1046
MspR9I	CCNGG	2 cut(s)	80, 278
MunI	CAATTG	1 cut(s)	186
MvaI	CCWGG	2 cut(s)	80, 278
MvnI	CGCG	2 cut(s)	126, 128
MwoI	GCNNNNNNNGC	3 cut(s)	32, 182, 296
NdeII	GATC	2 cut(s)	10, 196
NlaIII	CATG	5 cut(s)	308, 400, 494, 961, 1057
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	2 cut(s)	457, 523
NsbI	TGCGCA	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	248
PauI	GCGCGC	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 60
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	898
PleI	GAGTC	2 cut(s)	447, 985
PpsI	GAGTC	2 cut(s)	447, 985
Ppu21I	YACGTR	1 cut(s)	621
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	78, 276
PspEI	GGTNACC	1 cut(s)	457
PspGI	CCWGG	2 cut(s)	78, 276
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	4 cut(s)	298, 776, 850, 954
PspXI	VCTCGAGB	1 cut(s)	248
PteI	GCGCGC	1 cut(s)	126
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	1058
SacI	GAGCTC	1 cut(s)	114
SalI	GTCGAC	1 cut(s)	830
SaqAI	TTAA	2 cut(s)	561, 725
SatI	GCNGC	1 cut(s)	897
Sau3AI	GATC	2 cut(s)	10, 196
Sau96I	GGNCC	4 cut(s)	298, 776, 850, 954
SchI	GAGTC	2 cut(s)	448, 986
ScrFI	CCNGG	2 cut(s)	80, 278
SduI	GDGCHC	3 cut(s)	114, 292, 1045
SfaNI	GCATC	4 cut(s)	163, 249, 883, 922
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	1058
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SnaBI	TACGTA	1 cut(s)	621
SsiI	CCGC	3 cut(s)	124, 170, 302
SspMI	CTAG	1 cut(s)	1078
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	78, 276
StyI	CCWWGG	3 cut(s)	27, 537, 794
TaaI	ACNGT	4 cut(s)	207, 463, 472, 991
TaiI	ACGT	3 cut(s)	623, 681, 759
TaqI	TCGA	8 cut(s)	42, 54, 195, 249, 815, 831, 980, 998
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	561, 725
Tru9I	TTAA	2 cut(s)	561, 725
TscAI	CASTG	3 cut(s)	163, 778, 996
TseFI	GTSAC	2 cut(s)	457, 523
TseI	GCWGC	1 cut(s)	896
Tsp45I	GTSAC	2 cut(s)	457, 523
TspDTI	ATGAA	3 cut(s)	28, 507, 1076
TspRI	CASTG	3 cut(s)	163, 778, 996
XapI	RAATTY	4 cut(s)	494, 699, 743, 908
XhoI	CTCGAG	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	831
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	1 cut(s)	1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.