Rroxscaffold_5G00336340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001064
Physical Location & Seq
Forward (+)
4147819 .. 4157082
9264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336340.1

Sequence Viewer

Length: 414 bp
ATGCGTGTTCGGAGCAACCGACCTGCATTGGGTTCAAACATTGGAGCCCGTGGATTTGGGATTGAAGGCAAAAATGTCAAAATTGGGACTAAGAAGGTTTCGGGTAAGCAAGTAGTTTTCTCGTTCTTCAATCTTCGGGCCGGTTCAAACTCGACTAATCGCAAAGAGAAGTTCCGTAAATTGCTTGAATCGTATAAGCCGAGTCTTGATACTTGCAAGGAGAGCAGCTTGAAAATGATGAAGTTGGTTCTTTTGCCCGGAGAGATGCCGATTTGCCAACCGCCGAATTTGTATCCAATATGTTTCAACATTGCCTACAACCCTTCTAGAAAAATTGTACAAGGAGAGATGGACATGGAATCCCGAGGATTGGGTAGTCAGCATTATTATATCTCTGCAATCCTATTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.33

Weight (kDa)

10.02

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 31
AciI CCGC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 286
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 2 cut(s) 29, 370
AgsI TTSAA 8 cut(s) 36, 65, 130, 147, 188, 232, 307, 409
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Ama87I CYCGRG 1 cut(s) 363
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 286
AspS9I GGNCC 1 cut(s) 138
AsuC2I CCSGG 1 cut(s) 258
AvaI CYCGRG 1 cut(s) 363
BanII GRGCYC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 343
BciVI GTATCC 1 cut(s) 303
BcnI CCSGG 1 cut(s) 258
BfaI CTAG 1 cut(s) 327
BfuAI ACCTGC 1 cut(s) 31
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 258
BmeT110I CYCGRG 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 49, 364
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 370
Bse118I RCCGGY 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 49, 364
BseLI CCNNNNNNNGG 2 cut(s) 29, 370
BseMI GCAATG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 237
BshFI GGCC 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 2 cut(s) 141, 258
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 29, 370
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 49
Bsp1407I TGTACA 1 cut(s) 337
BspACI CCGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 337
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 49, 364
BstAUI TGTACA 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 90
BstDSI CCRYGG 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 237
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 49
BveI ACCTGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 338
CviAII CATG 1 cut(s) 355
CviJI RGCY 4 cut(s) 47, 140, 199, 228
CviKI_1 RGCY 4 cut(s) 47, 140, 199, 228
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 49
FaeI CATG 1 cut(s) 358
FaiI YATR 4 cut(s) 195, 301, 356, 390
FaqI GGGAC 1 cut(s) 100
FatI CATG 1 cut(s) 354
Fnu4HI GCNGC 1 cut(s) 226
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 1 cut(s) 327
GluI GCNGC 1 cut(s) 226
HaeIII GGCC 1 cut(s) 140
HapII CCGG 2 cut(s) 141, 258
Hin1II CATG 1 cut(s) 358
HinfI GANTC 3 cut(s) 188, 202, 359
HpaII CCGG 2 cut(s) 141, 258
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 3 cut(s) 206, 327, 363
HpyAV CCTTC 3 cut(s) 59, 88, 333
HpyCH4V TGCA 3 cut(s) 26, 216, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 1 cut(s) 358
LmnI GCTCC 2 cut(s) 12, 44
LpnPI CCDG 3 cut(s) 36, 154, 271
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 255
MaeI CTAG 1 cut(s) 327
MboII GAAGA 2 cut(s) 118, 125
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 5 cut(s) 81, 179, 286, 333, 409
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 1 cut(s) 359
MspI CCGG 2 cut(s) 141, 258
MspR9I CCNGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 222
NciI CCSGG 1 cut(s) 258
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 1 cut(s) 46
NmeAIII GCCGAG 1 cut(s) 225
PcsI WCGNNNNNNNCGW 2 cut(s) 16, 197
PfeI GAWTC 2 cut(s) 188, 359
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 138
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SatI GCNGC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 49
SetI ASST 3 cut(s) 25, 99, 230
SfaNI GCATC 1 cut(s) 255
Sse9I AATT 5 cut(s) 81, 179, 286, 333, 409
SsiI CCGC 1 cut(s) 281
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 256
TaqI TCGA 1 cut(s) 152
TasI AATT 5 cut(s) 81, 179, 286, 333, 409
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 2 cut(s) 188, 359
TseI GCWGC 1 cut(s) 225
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 164
XapI RAATTY 1 cut(s) 286
XbaI TCTAGA 1 cut(s) 326
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.