Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000055.1

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

99170 .. 100914

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000055.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgggttattcgatttgggaaatattgaaggtcttcatcgacgaccactttaagttcaccgtcatcctctacacccaggccatcaccgtcgactccaacaactccgagctctactccgaccgcgctcaggctaacatcaaatccaacaatctcaccgttaacaacctcctctctcttgcaatttccaacacatgttcttcatcgtcatcttcttgttttgtttatgaaattgaaggaattgaattgcggaaagttggtttagggatttggaaggttctacatttggtaagtgagtttcagatttgggatccgcctgtggcttatcatgaaagcacaaacactacagataagaacaaagggttagaattgaagacaaggaagctccaagtgcatttggtgatagaaggccaagaagccaaagtacatattcacaaggctctacactacaaaatgcagcgtatgatcctgaaaaaatcatgcaagagcaagctgcaacaaaggcacaggctacctttagaggttctctggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

176

Amino Acids

20.31

Weight (kDa)

9.08

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	123
AciI	CCGC	3 cut(s)	121, 247, 311
AclWI	GGATC	3 cut(s)	302, 315, 457
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	28, 233, 242, 370
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	3 cut(s)	109, 382, 490
AluI	AGCT	3 cut(s)	109, 382, 490
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	3 cut(s)	302, 315, 457
AoxI	GGCC	2 cut(s)	78, 406
ApeKI	GCWGC	2 cut(s)	454, 490
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	125
AsuHPI	GGTGA	4 cut(s)	49, 76, 145, 409
BamHI	GGATCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	111
BarI	GAAGNNNNNNTAC	2 cut(s)	405, 437
BbsI	GAAGAC	2 cut(s)	25, 377
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	466, 477
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	2 cut(s)	455, 491
BlsI	GCNGC	2 cut(s)	456, 492
Bme1390I	CCNGG	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	77
BpiI	GAAGAC	2 cut(s)	25, 377
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu10I	CCTNAGC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	466, 477
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	80, 408
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	2 cut(s)	80, 408
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	307, 462
BspACI	CCGC	3 cut(s)	121, 247, 311
BspANI	GGCC	2 cut(s)	80, 408
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	3 cut(s)	302, 315, 457
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	2 cut(s)	307, 462
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	3 cut(s)	61, 88, 157
BstC8I	GCNNGC	1 cut(s)	488
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	2 cut(s)	310, 465
BstMBI	GATC	2 cut(s)	307, 462
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	388, 499
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	342
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	466, 477
BstV2I	GAAGAC	2 cut(s)	25, 377
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	80, 408
BtsCI	GGATG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	488
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	3 cut(s)	192, 326, 477
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	309, 464
DpnII	GATC	2 cut(s)	307, 462
EciI	GGCGGA	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	3 cut(s)	195, 329, 480
FaiI	YATR	6 cut(s)	193, 225, 327, 426, 461, 478
FatI	CATG	3 cut(s)	191, 325, 476
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	455, 491
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	455, 491
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	2 cut(s)	455, 491
HaeIII	GGCC	2 cut(s)	80, 408
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	3 cut(s)	195, 329, 480
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	2 cut(s)	91, 160
HindII	GTYRAC	2 cut(s)	91, 160
HinfI	GANTC	1 cut(s)	92
HpaI	GTTAAC	1 cut(s)	160
HphI	GGTGA	4 cut(s)	49, 76, 145, 409
Hpy166II	GTNNAC	3 cut(s)	57, 91, 160
Hpy188I	TCNGA	3 cut(s)	106, 118, 300
Hpy188III	TCNNGA	2 cut(s)	326, 466
Hpy8I	GTNNAC	3 cut(s)	57, 91, 160
Hpy99I	CGWCG	2 cut(s)	44, 92
HpyAV	CCTTC	4 cut(s)	22, 227, 265, 398
HpyCH4III	ACNGT	3 cut(s)	61, 88, 157
HpyCH4V	TGCA	5 cut(s)	179, 391, 454, 480, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	388, 499
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	195, 329, 480
HspAI	GCGC	1 cut(s)	123
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	307, 462
LmnI	GCTCC	1 cut(s)	387
LpnPI	CCDG	7 cut(s)	62, 89, 113, 327, 479, 490, 511
Lsp1109I	GCAGC	2 cut(s)	466, 477
MalI	GATC	2 cut(s)	309, 464
MboI	GATC	2 cut(s)	307, 462
MboII	GAAGA	4 cut(s)	25, 189, 201, 382
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	5 cut(s)	180, 228, 237, 242, 365
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	4 cut(s)	120, 141, 168, 210
MnlI	CCTC	4 cut(s)	77, 176, 179, 511
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	2 cut(s)	51, 159
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	388, 499
NdeII	GATC	2 cut(s)	307, 462
NlaIII	CATG	3 cut(s)	195, 329, 480
NlaIV	GGNNCC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	195
PagI	TCATGA	1 cut(s)	325
PciI	ACATGT	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	456, 492
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PscI	ACATGT	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	111
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	51, 159
SatI	GCNGC	2 cut(s)	455, 491
Sau3AI	GATC	2 cut(s)	307, 462
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	8 cut(s)	33, 111, 168, 276, 384, 492, 514, 522
SfcI	CTRYAG	1 cut(s)	342
Sse9I	AATT	5 cut(s)	180, 228, 237, 242, 365
SsiI	CCGC	3 cut(s)	121, 247, 311
SspI	AATATT	1 cut(s)	24
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	61, 88, 157
TaqI	TCGA	3 cut(s)	11, 39, 90
TasI	AATT	5 cut(s)	180, 228, 237, 242, 365
TatI	WGTACW	1 cut(s)	421
Tru1I	TTAA	2 cut(s)	51, 159
Tru9I	TTAA	2 cut(s)	51, 159
TseI	GCWGC	2 cut(s)	454, 490
TspDTI	ATGAA	4 cut(s)	25, 189, 240, 342
XceI	RCATGY	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.