Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

75024037 .. 75045854

Gene Structure 21818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG436500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCTGTTAACCTGCTTCCAACTCTTAATCAATGCCATCCATACATTAGATTCCGATGGGTTGCTTTTCAAATCTGAGCCTTCAATGGAAATTTGGTTTAGGGATTTGGAAGGTTCTACATTTGAAAATGGGCTTCAGGATTGTGTGTTATCGGCCTTCCTGCAATGGGCAAATCACCGGCTAAATGGATCAAGACTGTCCTATTTGGGAAGAAGTCATCCAAACCTAATATATCAAAAGGAAGAGAGATTTGTAAATGAGAAAGAAGTGGTGGTTGCTGCCAGGGCAACTACAACTGAATTTGTTGTTGATCCGCCTATAGCTTTTCATGAAAGCATAAACACTATAGATAATAACAAAGGGTTAGAATGGGAGAACAAGGAAGCTCCAAATGCATTTGGTGATAGAGAGCCAAGAAGCCAAAGCACAGATTCACAAGGCTCTACACCACAAAATGCAGCGTATGATCATGAAAAAATCAGGCAAGAGCAAGCTGCAACAAAGGCACAGGCTACCTTTAGAGGTTCTCTGGTAAATCTCCTAAAGTTCGGGTATGATCCTGTTTTGAGGCTGCTGCAGGCTATCTTCATATGCTATTTACTCATCAATCTGTCGAGCATTTTCAATCCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTGAAGCTTGTCTCTTGGTATGACAACGAATGGGCTTATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

234

Amino Acids

26.67

Weight (kDa)

5.28

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	20
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	3 cut(s)	196, 305, 551
AcsI	RAATTY	2 cut(s)	90, 299
AcuI	CTGAAG	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	166, 635
AgsI	TTSAA	5 cut(s)	70, 84, 125, 625, 649
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	4 cut(s)	323, 386, 494, 667
AluI	AGCT	4 cut(s)	323, 386, 494, 667
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	3 cut(s)	196, 305, 551
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	5 cut(s)	278, 458, 494, 571, 574
ApoI	RAATTY	2 cut(s)	90, 299
AsuHPI	GGTGA	2 cut(s)	167, 413
BbvI	GCAGC	5 cut(s)	265, 470, 481, 558, 561
BccI	CCATC	2 cut(s)	44, 50
BciT130I	CCWGG	1 cut(s)	283
BclI	TGATCA	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	676
BfmI	CTRYAG	3 cut(s)	318, 345, 575
BfuAI	ACCTGC	1 cut(s)	20
BisI	GCNGC	5 cut(s)	279, 459, 495, 572, 575
BlsI	GCNGC	5 cut(s)	280, 460, 496, 573, 576
Bme1390I	CCNGG	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	282, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 635
Bse118I	RCCGGY	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	2 cut(s)	282, 630
BseGI	GGATG	2 cut(s)	36, 217
BseLI	CCNNNNNNNGG	2 cut(s)	166, 635
BseMI	GCAATG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	66
BseXI	GCAGC	5 cut(s)	265, 470, 481, 558, 561
BshFI	GGCC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	166, 635
BsmAI	GTCTC	1 cut(s)	676
BsnI	GGCC	1 cut(s)	155
Bsp143I	GATC	4 cut(s)	188, 310, 466, 556
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	67
BspHI	TCATGA	2 cut(s)	328, 469
BspMAI	CTGCAG	1 cut(s)	579
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	3 cut(s)	196, 305, 551
BsrDI	GCAATG	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	282, 630
BssMI	GATC	4 cut(s)	188, 310, 466, 556
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	492, 579
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	36, 217
BstKTI	GATC	4 cut(s)	191, 313, 469, 559
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	4 cut(s)	188, 310, 466, 556
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 392, 503, 641
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	3 cut(s)	318, 345, 575
BstV1I	GCAGC	5 cut(s)	265, 470, 481, 558, 561
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	36, 217
BveI	ACCTGC	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	492, 579
CciI	TCATGA	2 cut(s)	328, 469
Cfr10I	RCCGGY	1 cut(s)	177
CviAII	CATG	2 cut(s)	329, 470
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	4 cut(s)	190, 312, 468, 558
DpnII	GATC	4 cut(s)	188, 310, 466, 556
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	630
Eco57I	CTGAAG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	630
EcoT22I	ATGCAT	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	2 cut(s)	332, 473
FatI	CATG	2 cut(s)	328, 469
FauNDI	CATATG	1 cut(s)	590
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	5 cut(s)	279, 459, 495, 572, 575
FokI	GGATG	2 cut(s)	23, 204
Fsp4HI	GCNGC	5 cut(s)	279, 459, 495, 572, 575
GluI	GCNGC	5 cut(s)	279, 459, 495, 572, 575
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	178
Hin1II	CATG	2 cut(s)	332, 473
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	2 cut(s)	50, 431
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	2 cut(s)	167, 413
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	2 cut(s)	55, 76
Hpy188III	TCNNGA	4 cut(s)	137, 192, 329, 470
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	3 cut(s)	90, 104, 166
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	5 cut(s)	163, 395, 458, 497, 577
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 392, 503, 641
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	332, 473
Ksp22I	TGATCA	1 cut(s)	466
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	188, 310, 466, 556
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	5 cut(s)	265, 470, 481, 558, 561
MalI	GATC	4 cut(s)	190, 312, 468, 558
MboI	GATC	4 cut(s)	188, 310, 466, 556
MboII	GAAGA	3 cut(s)	222, 254, 577
MluCI	AATT	3 cut(s)	90, 299, 639
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	2 cut(s)	515, 561
Mph1103I	ATGCAT	1 cut(s)	397
MseI	TTAA	2 cut(s)	8, 26
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	4 cut(s)	284, 392, 503, 641
NdeI	CATATG	1 cut(s)	590
NdeII	GATC	4 cut(s)	188, 310, 466, 556
NlaIII	CATG	2 cut(s)	332, 473
NsiI	ATGCAT	1 cut(s)	397
PagI	TCATGA	2 cut(s)	328, 469
PfeI	GAWTC	2 cut(s)	50, 431
PkrI	GCNGC	5 cut(s)	280, 460, 496, 573, 576
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	8, 26
SatI	GCNGC	5 cut(s)	279, 459, 495, 572, 575
Sau3AI	GATC	4 cut(s)	188, 310, 466, 556
ScrFI	CCNGG	1 cut(s)	283
SfcI	CTRYAG	3 cut(s)	318, 345, 575
Sse9I	AATT	3 cut(s)	90, 299, 639
SsiI	CCGC	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	614
TasI	AATT	3 cut(s)	90, 299, 639
TfiI	GAWTC	2 cut(s)	50, 431
Tru1I	TTAA	2 cut(s)	8, 26
Tru9I	TTAA	2 cut(s)	8, 26
TseI	GCWGC	5 cut(s)	278, 458, 494, 571, 574
TspDTI	ATGAA	4 cut(s)	317, 345, 486, 577
XapI	RAATTY	2 cut(s)	90, 299
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.