Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Forward (+)

67005888 .. 67007550

Gene Structure 1663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG404000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAAACAACCACTACAGAGAGTGTTACAGCCGCAAAAGATGTTGAGCCAGTAAACCTGCTTTCCGATCAGGTGACAGTAGCACCTGTCAAACCAAAATACAGGCATGAATTCTACCAGAAGCCTGAAGAAGTGGCCGTGACTATATTGGCAAAGGGCATACCAGCCAAAGATGTTGCTGTTGAATTTGGTGAACAAATATTAAGTGTCAGCATTGATGTTCCTGGTGAAGATACATATCATTTTCAGCCTCGCCTGTTTGGGAAGATCATTCCTGAAAAGTGCAGATTTGAAGTTTTGTCAACCAAGGTTGAAATTCGCCTGGCCAAAGCTGAAGCCATACAGTGGACATCTCTTGAGTTCAGCAAGGATAACCCTGTTCCTCTAAAGGTCAATGCCCCAGTTATTGGAGCCCAAAGGCCATCTTACCCATCCTCCAAACCAAAGCGGGTAGATTGGGACAAGCTCGAAGCCGAAGTGAAGAAGGAGGAGAAAGATGAGAAGCTTGATGGCGATGCAGCTTTGAACAAATTTTTCCAAGACATATACAAGGATGCTGATGAGGACACAAGAAGGGCCATGAGAAAATCTTTTGTGGAGTCAAACGGGACGGTGCTTTCGACAAACTGGAAAGAAGTGGGCAACAAGAAGGTCGAGGGAAGTGCCCCTGATGGTATGGAGATGAAGAAATGGGAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

233

Amino Acids

26.32

Weight (kDa)

5.37

Isoelectric Point (pI)

28.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	35 - 110	5.6e-12	CS domain
SGS	PF05002	152 - 231	5.5e-36	SGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	66
AccB7I	CCANNNNNTGG	2 cut(s)	345, 407
AciI	CCGC	2 cut(s)	33, 448
AcoI	YGGCCR	2 cut(s)	135, 324
AcsI	RAATTY	4 cut(s)	110, 185, 315, 530
AcuI	CTGAAG	2 cut(s)	147, 354
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	2 cut(s)	345, 407
AgsI	TTSAA	4 cut(s)	185, 293, 314, 526
AjnI	CCWGG	2 cut(s)	223, 321
AluBI	AGCT	4 cut(s)	332, 466, 505, 521
AluI	AGCT	4 cut(s)	332, 466, 505, 521
AoxI	GGCC	4 cut(s)	135, 324, 419, 576
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	4 cut(s)	110, 185, 315, 530
ArsI	GACNNNNNNTTYG	2 cut(s)	601, 633
AspS9I	GGNCC	1 cut(s)	576
AsuHPI	GGTGA	3 cut(s)	85, 203, 239
BaeGI	GKGCMC	1 cut(s)	667
BalI	TGGCCA	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	530
BccI	CCATC	4 cut(s)	430, 439, 503, 665
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	2 cut(s)	225, 323
BfmI	CTRYAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	66
BisI	GCNGC	2 cut(s)	33, 519
BlsI	GCNGC	2 cut(s)	34, 520
BmcAI	AGTACT	1 cut(s)	698
Bme1390I	CCNGG	2 cut(s)	225, 323
BmgT120I	GGNCC	1 cut(s)	576
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	2 cut(s)	225, 323
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	505, 544
BmuI	ACTGGG	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 407
Bse1I	ACTGG	3 cut(s)	50, 401, 632
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	225, 323
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	431, 559
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	345, 407
BseNI	ACTGG	3 cut(s)	50, 401, 632
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	304
BshFI	GGCC	4 cut(s)	137, 326, 421, 578
BslFI	GGGAC	2 cut(s)	473, 622
BslI	CCNNNNNNNGG	2 cut(s)	345, 407
BsmFI	GGGAC	2 cut(s)	473, 622
BsnI	GGCC	4 cut(s)	137, 326, 421, 578
Bsp1286I	GDGCHC	2 cut(s)	415, 667
Bsp143I	GATC	2 cut(s)	67, 267
BspACI	CCGC	2 cut(s)	33, 448
BspANI	GGCC	4 cut(s)	137, 326, 421, 578
BspLI	GGNNCC	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	66
BsrI	ACTGG	3 cut(s)	50, 401, 632
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	67, 267
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	2 cut(s)	225, 323
Bst4CI	ACNGT	3 cut(s)	79, 345, 613
BstF5I	GGATG	2 cut(s)	431, 559
BstKTI	GATC	2 cut(s)	70, 270
BstMBI	GATC	2 cut(s)	67, 267
BstNI	CCWGG	2 cut(s)	225, 323
BstSCI	CCNGG	2 cut(s)	223, 321
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	667
BstV1I	GCAGC	1 cut(s)	530
BsuRI	GGCC	4 cut(s)	137, 326, 421, 578
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	431, 559
BtsIMutI	CAGTG	1 cut(s)	350
BveI	ACCTGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	576
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	2 cut(s)	107, 580
CviQI	GTAC	1 cut(s)	697
DpnI	GATC	2 cut(s)	69, 269
DpnII	GATC	2 cut(s)	67, 267
EaeI	YGGCCR	2 cut(s)	135, 324
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	147, 354
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	223, 321
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	110, 583
FaiI	YATR	9 cut(s)	108, 146, 161, 238, 341, 545, 547, 581, 677
FalI	AAGNNNNNCTT	2 cut(s)	409, 441
FaqI	GGGAC	2 cut(s)	473, 622
FatI	CATG	2 cut(s)	106, 579
FauI	CCCGC	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	33, 519
FokI	GGATG	2 cut(s)	418, 566
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	2 cut(s)	33, 519
GluI	GCNGC	2 cut(s)	33, 519
HaeIII	GGCC	4 cut(s)	137, 326, 421, 578
Hin1II	CATG	2 cut(s)	110, 583
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	1 cut(s)	599
HphI	GGTGA	3 cut(s)	85, 203, 239
Hpy166II	GTNNAC	4 cut(s)	55, 194, 303, 348
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	275, 356
Hpy8I	GTNNAC	4 cut(s)	55, 194, 303, 348
HpyAV	CCTTC	3 cut(s)	478, 567, 643
HpyCH4III	ACNGT	3 cut(s)	79, 345, 613
HpyCH4V	TGCA	2 cut(s)	285, 518
Hsp92II	CATG	2 cut(s)	110, 583
Kzo9I	GATC	2 cut(s)	67, 267
LmnI	GCTCC	1 cut(s)	410
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	2 cut(s)	505, 544
MaeIII	GTNAC	3 cut(s)	25, 73, 139
MalI	GATC	2 cut(s)	69, 269
MboI	GATC	2 cut(s)	67, 267
MboII	GAAGA	5 cut(s)	140, 242, 277, 493, 697
MhlI	GDGCHC	2 cut(s)	415, 667
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	4 cut(s)	110, 185, 315, 530
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	608
MnlI	CCTC	6 cut(s)	261, 393, 445, 481, 556, 649
Mox20I	TGGCCA	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	225, 323
MvaI	CCWGG	2 cut(s)	225, 323
NdeII	GATC	2 cut(s)	67, 267
NlaIII	CATG	2 cut(s)	110, 583
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	2 cut(s)	73, 139
PcsI	WCGNNNNNNNCGW	1 cut(s)	617
PflMI	CCANNNNNTGG	2 cut(s)	345, 407
PkrI	GCNGC	2 cut(s)	34, 520
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
Psp6I	CCWGG	2 cut(s)	223, 321
PspGI	CCWGG	2 cut(s)	223, 321
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	576
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	2 cut(s)	33, 519
Sau3AI	GATC	2 cut(s)	67, 267
Sau96I	GGNCC	1 cut(s)	576
ScaI	AGTACT	1 cut(s)	698
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	2 cut(s)	225, 323
SduI	GDGCHC	2 cut(s)	415, 667
SfaNI	GCATC	2 cut(s)	505, 544
SfcI	CTRYAG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	4 cut(s)	110, 185, 315, 530
SsiI	CCGC	2 cut(s)	33, 448
SspI	AATATT	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	223, 321
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	79, 345, 613
TaqI	TCGA	3 cut(s)	468, 620, 654
TasI	AATT	4 cut(s)	110, 185, 315, 530
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	350
TseFI	GTSAC	2 cut(s)	73, 139
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	2 cut(s)	73, 139
TspDTI	ATGAA	2 cut(s)	123, 698
TspRI	CASTG	1 cut(s)	350
Van91I	CCANNNNNTGG	2 cut(s)	345, 407
XapI	RAATTY	4 cut(s)	110, 185, 315, 530
ZrmI	AGTACT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.