Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

57285953 .. 57288887

Gene Structure 2935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG386700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCAAAATTGGGTCTAAGAAGGTTTCTGGGTAAGCGGATACTAGGTGGATTAGAGTTGGAATTTTGTATCAGGAAGTTGGAAATTGAGGATGTTCAAACTCTGAATAACCGCAAAGAGAAGTTTCGTAAATTTCTTGAATCGTATAAGCTGAGTCTTGTATACTTGCAAGGAGAGCAGCTTGAAAATGATGAAGTTGTGCCAGTTGAAGATCCATGTAAAAGAAAGAGAGGCGACACAAAAGATCATCCCCTGACCCAGTGGTTCATGAATTTTTTAGAAGTTGATGAGGTTCTACAGCTAGCTGCAGCTTGTCAGCAGAAAATCCTTTGCCATGGAATGCATTTCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0031056 GO:0031248 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0035065 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:1901564 GO:1901983 GO:1902275 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241 GO:2000756

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

117

Amino Acids

13.8

Weight (kDa)

7.68

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	2 cut(s)	37, 112
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	3 cut(s)	62, 131, 271
AgsI	TTSAA	4 cut(s)	98, 140, 185, 209
AluBI	AGCT	5 cut(s)	151, 181, 301, 305, 311
AluI	AGCT	5 cut(s)	151, 181, 301, 305, 311
AlwI	GGATC	1 cut(s)	206
ApeKI	GCWGC	3 cut(s)	178, 305, 308
ApoI	RAATTY	3 cut(s)	62, 131, 271
AsuNHI	GCTAGC	1 cut(s)	301
BbvI	GCAGC	3 cut(s)	190, 292, 320
BciVI	GTATCC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	44, 302
BfmI	CTRYAG	2 cut(s)	296, 306
BfuI	GTATCC	1 cut(s)	33
BisI	GCNGC	3 cut(s)	179, 306, 309
BlsI	GCNGC	3 cut(s)	180, 307, 310
BmrI	ACTGGG	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	305
BmuI	ACTGGG	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	334
Bse1I	ACTGG	2 cut(s)	203, 259
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	97, 247
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	203, 259
BseXI	GCAGC	3 cut(s)	190, 292, 320
BsmI	GAATGC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	211, 244
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	2 cut(s)	37, 112
BspCNI	CTCAG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	310
BspOI	GCTAGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	203, 259
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	2 cut(s)	211, 244
BssNAI	GTATAC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	334
Bst1107I	GTATAC	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	17, 152
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	97, 247
BstKTI	GATC	2 cut(s)	214, 247
BstMBI	GATC	2 cut(s)	211, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstSFI	CTRYAG	2 cut(s)	296, 306
BstV1I	GCAGC	3 cut(s)	190, 292, 320
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BstZ17I	GTATAC	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	2 cut(s)	97, 247
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	303
CciI	TCATGA	1 cut(s)	267
CviAII	CATG	3 cut(s)	216, 268, 335
CviJI	RGCY	5 cut(s)	151, 181, 301, 305, 311
CviKI_1	RGCY	5 cut(s)	151, 181, 301, 305, 311
DdeI	CTNAG	2 cut(s)	17, 152
DpnI	GATC	2 cut(s)	213, 246
DpnII	GATC	2 cut(s)	211, 244
Eco130I	CCWWGG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	3 cut(s)	219, 271, 338
FaiI	YATR	6 cut(s)	147, 163, 217, 269, 336, 352
FatI	CATG	3 cut(s)	215, 267, 334
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	179, 306, 309
FokI	GGATG	2 cut(s)	104, 234
Fsp4HI	GCNGC	3 cut(s)	179, 306, 309
FspBI	CTAG	2 cut(s)	44, 302
GluI	GCNGC	3 cut(s)	179, 306, 309
Hin1II	CATG	3 cut(s)	219, 271, 338
HinfI	GANTC	2 cut(s)	140, 154
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	3 cut(s)	73, 137, 268
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	169, 308, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	2 cut(s)	17, 152
Hsp92II	CATG	3 cut(s)	219, 271, 338
Kzo9I	GATC	2 cut(s)	211, 244
LpnPI	CCDG	5 cut(s)	14, 58, 216, 266, 272
Lsp1109I	GCAGC	3 cut(s)	190, 292, 320
MaeI	CTAG	2 cut(s)	44, 302
MalI	GATC	2 cut(s)	213, 246
MboI	GATC	2 cut(s)	211, 244
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	5 cut(s)	8, 62, 84, 131, 271
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	2 cut(s)	39, 60
MnlI	CCTC	3 cut(s)	82, 224, 283
Mph1103I	ATGCAT	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	2 cut(s)	211, 244
NheI	GCTAGC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	219, 271, 338
NsiI	ATGCAT	1 cut(s)	345
PagI	TCATGA	1 cut(s)	267
PctI	GAATGC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	180, 307, 310
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PstI	CTGCAG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	211
SatI	GCNGC	3 cut(s)	179, 306, 309
Sau3AI	GATC	2 cut(s)	211, 244
SchI	GAGTC	1 cut(s)	163
SetI	ASST	8 cut(s)	26, 49, 153, 183, 294, 303, 307, 313
SfcI	CTRYAG	2 cut(s)	296, 306
Sse9I	AATT	5 cut(s)	8, 62, 84, 131, 271
SsiI	CCGC	2 cut(s)	37, 112
SspMI	CTAG	2 cut(s)	44, 302
StyI	CCWWGG	1 cut(s)	334
TasI	AATT	5 cut(s)	8, 62, 84, 131, 271
TfiI	GAWTC	1 cut(s)	140
TscAI	CASTG	1 cut(s)	266
TseI	GCWGC	3 cut(s)	178, 305, 308
TspDTI	ATGAA	3 cut(s)	207, 256, 284
TspRI	CASTG	1 cut(s)	266
XapI	RAATTY	3 cut(s)	62, 131, 271
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	2 cut(s)	44, 302
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.