MD07G1280600.v1.1

Protein SGT1 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
34440381 .. 34443448
3068 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1280600.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGGCTTCCGATCTCGAGAAGAGTGCGAAGGAGGCGTTCATTGACGACCACTTCGAGTTGGCCGTTGACCTCTACACCCAGGCCATCGCTCTTAATCCTCAGAGCGCCGAGCTCTACTCCGACCGCGCGCAGGCCAACATCAAATCCGGCAATCTCACTGGGGCTGTTGCGGATGCGAACAAGGCAATTGAGTTCGATCCATCACTGTACAAAGCGTATTTGCGCAAAGGAATTGCCTGCATCAAGCTCGAGGAATATCAGACTGCAAAGGCAACCCTGGAAATTGGTGCTCCTCTGGCCCCGCATGAGACACGATTCGCTGAATTGATAAAAGAGTGTGATGAGAAAATTGCAGAGGAAGCTGATGTTCTACCAACGGCTTCATTGGAGAAAAACATTACAGAGAATGTTATACCTGCAGAAGATGTTCAGCCTGTGAGTCAACCTTCCAATCAGGTGACCGTAGCAACTGTCAAACCAAAATACAGGCATGAATTCTACCAGAAGCCAGAAGAAGGGGTTGTGACAATATTCGCCAAGGGCATACCAGCCAAAGATGTTAATGTTGACTTTGGTGAACAAATACTAAGTGTTAGCATTGATGTTGCTGGTGAAGATACATATCATTTTCAGCCTCGCTTATTTGCAAAGATAATACCTGAAAAGTGCAGATTTGACGTTCTGTCCACCAAAGTTGAAATTCGCTTGGCTAAAGCTGAAGCATTACACTGGACATCTCTTGAATTCAGCAAGGACAGCCCTGTTCCACTAAGGGTCAGTGGCCAAGTTGTTGAAGCACCAAGGCCATCCTACCCATCCTCGAAACCAAAAAGGGTTGACTGGGATAAGCTGGAGGCCCAAGTGAAGAAGGAGGAAAAAGAAGAGAAGCTTGATGGTGATGCAGCTTTGAACAAATTTTTCCAAGACATATACAAGGATGCTGATGAGGACACAAGAAGGGCCATGAGAAAATCTTTTGTGGAGTCGAACGGGACAGTGCTGTCGACAAACTGGAAAGAAGTGGGAAACAAAAAGGTTGAGGGAAGTGCTCCGGACGGCATGGAGATGAAGAAATGGGAGTTCTAG

Protein Analysis

362

Amino Acids

40.37

Weight (kDa)

5.07

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 163 - 238 1.9e-10 CS domain
SGS PF05002 280 - 359 1.2e-35 SGS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1000
Acc16I TGCGCA 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 424
AccI GTMKAC 1 cut(s) 1004
AccII CGCG 2 cut(s) 126, 128
AccIII TCCGGA 1 cut(s) 1051
AciI CCGC 3 cut(s) 124, 170, 302
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 2 cut(s) 60, 781
AcsI RAATTY 4 cut(s) 494, 699, 743, 914
AcuI CTGAAG 1 cut(s) 738
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 130, 515
AgsI TTSAA 4 cut(s) 698, 743, 794, 910
AhdI GACNNNNNGTC 1 cut(s) 682
AjnI CCWGG 2 cut(s) 78, 276
AluBI AGCT 7 cut(s) 112, 247, 362, 716, 850, 889, 905
AluI AGCT 7 cut(s) 112, 247, 362, 716, 850, 889, 905
Alw21I GWGCWC 3 cut(s) 114, 292, 1051
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 2 cut(s) 14, 248
Aor13HI TCCGGA 1 cut(s) 1051
AoxI GGCC 8 cut(s) 60, 81, 132, 297, 781, 803, 855, 960
ApeKI GCWGC 1 cut(s) 902
ApoI RAATTY 4 cut(s) 494, 699, 743, 914
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
Asp700I GAANNNNTTC 1 cut(s) 426
AspLEI GCGC 4 cut(s) 107, 128, 130, 225
AspS9I GGNCC 3 cut(s) 298, 856, 960
AsuHPI GGTGA 4 cut(s) 469, 587, 623, 908
AvaI CYCGRG 2 cut(s) 14, 248
BalI TGGCCA 1 cut(s) 783
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 3 cut(s) 114, 292, 1051
BbvI GCAGC 1 cut(s) 914
BccI CCATC 5 cut(s) 92, 208, 814, 823, 887
BceAI ACGGC 3 cut(s) 47, 393, 1072
BcgI CGANNNNNNTGC 4 cut(s) 5, 39, 229, 263
BciT130I CCWGG 2 cut(s) 80, 278
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 1 cut(s) 1084
BfmI CTRYAG 1 cut(s) 417
BfoI RGCGCY 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 424
BisI GCNGC 1 cut(s) 903
BlsI GCNGC 1 cut(s) 904
Bme1390I CCNGG 2 cut(s) 80, 278
BmeRI GACNNNNNGTC 1 cut(s) 682
BmeT110I CYCGRG 2 cut(s) 14, 248
BmgT120I GGNCC 3 cut(s) 298, 856, 960
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 2 cut(s) 80, 278
BmrI ACTGGG 2 cut(s) 168, 850
BmsI GCATC 4 cut(s) 163, 249, 889, 928
BmuI ACTGGG 2 cut(s) 168, 850
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 1 cut(s) 872
BsaBI GATNNNNATC 1 cut(s) 621
BsaJI CCNNGG 4 cut(s) 78, 276, 537, 800
BsaWI WCCGGW 1 cut(s) 1051
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 515
Bse1I ACTGG 4 cut(s) 163, 734, 845, 1016
Bse8I GATNNNNATC 1 cut(s) 621
BseAI TCCGGA 1 cut(s) 1051
BseBI CCWGG 2 cut(s) 80, 278
BseDI CCNNGG 4 cut(s) 78, 276, 537, 800
BseGI GGATG 4 cut(s) 178, 806, 815, 943
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 2 cut(s) 130, 515
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 4 cut(s) 163, 734, 845, 1016
BsePI GCGCGC 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 914
BsgI GTGCAG 1 cut(s) 688
Bsh1236I CGCG 2 cut(s) 126, 128
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 8 cut(s) 62, 83, 134, 299, 783, 805, 857, 962
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 3 cut(s) 114, 292, 1051
BsiHKCI CYCGRG 2 cut(s) 14, 248
BsiSI CCGG 2 cut(s) 147, 1052
BslFI GGGAC 1 cut(s) 1006
BslI CCNNNNNNNGG 2 cut(s) 130, 515
BsmAI GTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 1006
BsnI GGCC 8 cut(s) 62, 83, 134, 299, 783, 805, 857, 962
BsoBI CYCGRG 2 cut(s) 14, 248
Bsp1286I GDGCHC 3 cut(s) 114, 292, 1051
Bsp13I TCCGGA 1 cut(s) 1051
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 2 cut(s) 10, 196
BspACI CCGC 3 cut(s) 124, 170, 302
BspANI GGCC 8 cut(s) 62, 83, 134, 299, 783, 805, 857, 962
BspCNI CTCAG 1 cut(s) 112
BspEI TCCGGA 1 cut(s) 1051
BspFNI CGCG 2 cut(s) 126, 128
BspLI GGNNCC 1 cut(s) 300
BspMAI CTGCAG 1 cut(s) 421
BspMI ACCTGC 1 cut(s) 424
BspPI GGATC 1 cut(s) 191
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 4 cut(s) 163, 734, 845, 1016
BssECI CCNNGG 4 cut(s) 78, 276, 537, 800
BssHII GCGCGC 1 cut(s) 126
BssMI GATC 2 cut(s) 10, 196
BssT1I CCWWGG 2 cut(s) 537, 800
Bst2UI CCWGG 2 cut(s) 80, 278
Bst4CI ACNGT 4 cut(s) 207, 463, 472, 997
Bst6I CTCTTC 2 cut(s) 14, 876
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 3 cut(s) 128, 132, 238
BstDEI CTNAG 3 cut(s) 99, 587, 770
BstEII GGTNACC 1 cut(s) 457
BstF5I GGATG 4 cut(s) 178, 806, 815, 943
BstFNI CGCG 2 cut(s) 126, 128
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 4 cut(s) 107, 128, 130, 225
BstKTI GATC 2 cut(s) 13, 199
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 2 cut(s) 10, 196
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 5 cut(s) 32, 182, 296, 359, 756
BstNI CCWGG 2 cut(s) 80, 278
BstPI GGTNACC 1 cut(s) 457
BstSCI CCNGG 2 cut(s) 78, 276
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 2 cut(s) 126, 128
BstV1I GCAGC 1 cut(s) 914
BsuRI GGCC 8 cut(s) 62, 83, 134, 299, 783, 805, 857, 962
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 4 cut(s) 178, 806, 815, 943
BtsIMutI CAGTG 5 cut(s) 156, 203, 727, 784, 1002
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 3 cut(s) 128, 132, 238
CfoI GCGC 4 cut(s) 107, 128, 130, 225
Cfr13I GGNCC 3 cut(s) 298, 856, 960
Csp6I GTAC 1 cut(s) 208
CspCI CAANNNNNGTGG 2 cut(s) 676, 711
CviAII CATG 4 cut(s) 305, 491, 964, 1060
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 3 cut(s) 99, 587, 770
DpnI GATC 2 cut(s) 12, 198
DpnII GATC 2 cut(s) 10, 196
DrdI GACNNNNNNGTC 1 cut(s) 1000
DriI GACNNNNNGTC 1 cut(s) 682
DseDI GACNNNNNNGTC 1 cut(s) 1000
EaeI YGGCCR 2 cut(s) 60, 781
Eam1104I CTCTTC 2 cut(s) 14, 876
Eam1105I GACNNNNNGTC 1 cut(s) 682
EarI CTCTTC 2 cut(s) 14, 876
Ecl136II GAGCTC 1 cut(s) 112
Eco130I CCWWGG 2 cut(s) 537, 800
Eco24I GRGCYC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 738
Eco88I CYCGRG 2 cut(s) 14, 248
Eco91I GGTNACC 1 cut(s) 457
EcoICRI GAGCTC 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 457
EcoRI GAATTC 2 cut(s) 494, 743
EcoRII CCWGG 2 cut(s) 78, 276
EcoT14I CCWWGG 2 cut(s) 537, 800
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 2 cut(s) 537, 800
FaeI CATG 4 cut(s) 308, 494, 967, 1063
FaiI YATR 9 cut(s) 306, 413, 492, 545, 622, 929, 931, 965, 1061
FalI AAGNNNNNCTT 2 cut(s) 873, 905
FaqI GGGAC 1 cut(s) 1006
FatI CATG 4 cut(s) 304, 490, 963, 1059
FauI CCCGC 1 cut(s) 309
FblI GTMKAC 1 cut(s) 1004
Fnu4HI GCNGC 1 cut(s) 903
FokI GGATG 4 cut(s) 185, 793, 802, 950
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 903
FspBI CTAG 1 cut(s) 1084
FspI TGCGCA 1 cut(s) 224
GlaI GCGC 4 cut(s) 106, 127, 129, 224
GluI GCNGC 1 cut(s) 903
GsuI CTGGAG 1 cut(s) 872
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 8 cut(s) 62, 83, 134, 299, 783, 805, 857, 962
HapII CCGG 2 cut(s) 147, 1052
HhaI GCGC 4 cut(s) 107, 128, 130, 225
Hin1II CATG 4 cut(s) 308, 494, 967, 1063
Hin6I GCGC 4 cut(s) 105, 126, 128, 223
HinP1I GCGC 4 cut(s) 105, 126, 128, 223
HincII GTYRAC 5 cut(s) 67, 443, 568, 838, 1005
HindII GTYRAC 5 cut(s) 67, 443, 568, 838, 1005
HindIII AAGCTT 1 cut(s) 887
HinfI GANTC 3 cut(s) 315, 439, 983
HpaII CCGG 2 cut(s) 147, 1052
HphI GGTGA 4 cut(s) 469, 587, 623, 908
Hpy166II GTNNAC 7 cut(s) 67, 443, 568, 578, 687, 838, 1005
Hpy188I TCNGA 4 cut(s) 10, 102, 121, 261
Hpy188III TCNNGA 4 cut(s) 14, 16, 740, 1052
Hpy8I GTNNAC 7 cut(s) 67, 443, 568, 578, 687, 838, 1005
HpyAV CCTTC 5 cut(s) 22, 456, 509, 862, 951
HpyCH4III ACNGT 4 cut(s) 207, 463, 472, 997
HpyCH4IV ACGT 1 cut(s) 678
HpyCH4V TGCA 7 cut(s) 240, 266, 353, 419, 647, 669, 902
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 182, 296, 359, 756
HpyF3I CTNAG 3 cut(s) 99, 587, 770
HpySE526I ACGT 1 cut(s) 678
Hsp92II CATG 4 cut(s) 308, 494, 967, 1063
HspAI GCGC 4 cut(s) 105, 126, 128, 223
Kpn2I TCCGGA 1 cut(s) 1051
Kzo9I GATC 2 cut(s) 10, 196
LmnI GCTCC 2 cut(s) 295, 1054
Lsp1109I GCAGC 1 cut(s) 914
LweI GCATC 4 cut(s) 163, 249, 889, 928
MaeI CTAG 1 cut(s) 1084
MaeII ACGT 1 cut(s) 678
MaeIII GTNAC 2 cut(s) 457, 523
MalI GATC 2 cut(s) 12, 198
MboI GATC 2 cut(s) 10, 196
MboII GAAGA 7 cut(s) 31, 434, 524, 626, 877, 893, 1081
MfeI CAATTG 1 cut(s) 186
MhlI GDGCHC 3 cut(s) 114, 292, 1051
MlsI TGGCCA 1 cut(s) 783
MluCI AATT 9 cut(s) 186, 231, 282, 323, 348, 494, 699, 743, 914
MluNI TGGCCA 1 cut(s) 783
MlyI GAGTC 2 cut(s) 448, 992
MmeI TCCRAC 1 cut(s) 144
Mox20I TGGCCA 1 cut(s) 783
MroI TCCGGA 1 cut(s) 1051
MroXI GAANNNNTTC 1 cut(s) 426
MscI TGGCCA 1 cut(s) 783
MseI TTAA 2 cut(s) 93, 561
MslI CAYNNNNRTG 1 cut(s) 1064
Msp20I TGGCCA 1 cut(s) 783
MspI CCGG 2 cut(s) 147, 1052
MspR9I CCNGG 2 cut(s) 80, 278
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 2 cut(s) 80, 278
MvnI CGCG 2 cut(s) 126, 128
MwoI GCNNNNNNNGC 5 cut(s) 32, 182, 296, 359, 756
NdeII GATC 2 cut(s) 10, 196
NlaIII CATG 4 cut(s) 308, 494, 967, 1063
NlaIV GGNNCC 1 cut(s) 300
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 2 cut(s) 457, 523
NsbI TGCGCA 1 cut(s) 224
PaeR7I CTCGAG 2 cut(s) 14, 248
PauI GCGCGC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 60
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 1 cut(s) 315
PkrI GCNGC 1 cut(s) 904
PleI GAGTC 2 cut(s) 447, 991
PpsI GAGTC 2 cut(s) 447, 991
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 78, 276
PspEI GGTNACC 1 cut(s) 457
PspGI CCWGG 2 cut(s) 78, 276
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 3 cut(s) 298, 856, 960
PspXI VCTCGAGB 1 cut(s) 248
PstI CTGCAG 1 cut(s) 421
PteI GCGCGC 1 cut(s) 126
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 1064
SacI GAGCTC 1 cut(s) 114
SalI GTCGAC 1 cut(s) 1003
SaqAI TTAA 2 cut(s) 93, 561
SatI GCNGC 1 cut(s) 903
Sau3AI GATC 2 cut(s) 10, 196
Sau96I GGNCC 3 cut(s) 298, 856, 960
SchI GAGTC 2 cut(s) 448, 992
ScrFI CCNGG 2 cut(s) 80, 278
SduI GDGCHC 3 cut(s) 114, 292, 1051
SfaNI GCATC 4 cut(s) 163, 249, 889, 928
SfcI CTRYAG 1 cut(s) 417
Sfr274I CTCGAG 2 cut(s) 14, 248
SlaI CTCGAG 2 cut(s) 14, 248
SmiMI CAYNNNNRTG 1 cut(s) 1064
SmlI CTYRAG 2 cut(s) 14, 248
SmoI CTYRAG 2 cut(s) 14, 248
Sse9I AATT 9 cut(s) 186, 231, 282, 323, 348, 494, 699, 743, 914
SsiI CCGC 3 cut(s) 124, 170, 302
SspI AATATT 1 cut(s) 531
SspMI CTAG 1 cut(s) 1084
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 78, 276
StyI CCWWGG 2 cut(s) 537, 800
TaaI ACNGT 4 cut(s) 207, 463, 472, 997
TaiI ACGT 1 cut(s) 681
TaqI TCGA 7 cut(s) 15, 54, 195, 249, 821, 986, 1004
TasI AATT 9 cut(s) 186, 231, 282, 323, 348, 494, 699, 743, 914
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 2 cut(s) 93, 561
Tru9I TTAA 2 cut(s) 93, 561
TscAI CASTG 5 cut(s) 163, 210, 734, 784, 1002
TseFI GTSAC 2 cut(s) 457, 523
TseI GCWGC 1 cut(s) 902
Tsp45I GTSAC 2 cut(s) 457, 523
TspDTI ATGAA 4 cut(s) 28, 372, 507, 1082
TspRI CASTG 5 cut(s) 163, 210, 734, 784, 1002
XapI RAATTY 4 cut(s) 494, 699, 743, 914
XhoI CTCGAG 2 cut(s) 14, 248
XmiI GTMKAC 1 cut(s) 1004
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 1 cut(s) 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.