Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

39935122 .. 39937208

Gene Structure 2087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG223200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAACTTGTGAGAATTCTCCCTAGTGCAGAAGATGAGGTCAACGTAGCTTGTTTTCATCCTTCTGTCGGAGGTGGCCTTGTTTATGGAACTAAGGTTGATGCAAATTTCAAAAGAGGCAGAGGAGACCATAATAGTGATCCATTTGAGGCTACGCCACCGAGCAGGTTTCGTCACAAACCTATAGTGTTGATGCGAATCTCTGCCTTTCTTCGTCTCTATCAGGCACTGATGGCAATGCCTACTCCCGATTTCAACCTTTGTCTCTTCCTAATTCCAGAAAGAGTGTGCCATGCTTGCTGGCCCAAAATGGGCACCATTTGCTTCTTGGCTCACTGGCTGTTCTTTCGATTAGGTGGATTTGGTGCTCACCATTTTTGTTCAAGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 ko04140 map04137 map04140

Pfam Domains

Protein Families

WD40

Protein Analysis

130

Amino Acids

14.71

Weight (kDa)

8.79

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	314
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	2 cut(s)	15, 106
AfiI	CCNNNNNNNGG	2 cut(s)	68, 311
AgsI	TTSAA	3 cut(s)	112, 256, 384
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	3 cut(s)	120, 221, 269
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	2 cut(s)	76, 302
ApoI	RAATTY	2 cut(s)	15, 106
AspS9I	GGNCC	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	362
BaeGI	GKGCMC	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	370
BccI	CCATC	1 cut(s)	226
BcoDI	GTCTC	3 cut(s)	120, 221, 269
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	1 cut(s)	316
BmsI	GCATC	3 cut(s)	91, 183, 377
BsaBI	GATNNNNATC	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 311
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	197
BseGI	GGATG	1 cut(s)	58
BseJI	GATNNNNATC	1 cut(s)	197
BseLI	CCNNNNNNNGG	2 cut(s)	68, 311
BseMI	GCAATG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	317
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	78, 304
BshNI	GGYRCC	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	68, 311
BsmAI	GTCTC	3 cut(s)	120, 221, 269
BsmBI	CGTCTC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	78, 304
Bso31I	GGTCTC	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	317, 370
Bsp143I	GATC	1 cut(s)	139
BspANI	GGCC	2 cut(s)	78, 304
BspLI	GGNNCC	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	341
BssMI	GATC	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	298, 302
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	3 cut(s)	120, 221, 269
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 297, 321
BstSFI	CTRYAG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	78, 304
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	227, 334
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	298, 302
CaiI	CAGNNNCTG	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	303
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	6 cut(s)	50, 78, 152, 304, 332, 340
CviKI_1	RGCY	6 cut(s)	50, 78, 152, 304, 332, 340
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	1 cut(s)	296
FaiI	YATR	4 cut(s)	87, 132, 185, 294
FatI	CATG	1 cut(s)	292
FokI	GGATG	1 cut(s)	45
FspBI	CTAG	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	78, 304
Hin1II	CATG	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	198
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	3 cut(s)	248, 278, 384
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	29, 104
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 297, 321
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	139
LpnPI	CCDG	5 cut(s)	151, 209, 286, 291, 322
LweI	GCATC	3 cut(s)	91, 183, 377
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	3 cut(s)	44, 203, 259
MhlI	GDGCHC	2 cut(s)	317, 370
MluCI	AATT	3 cut(s)	15, 106, 273
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	5 cut(s)	31, 65, 110, 116, 142
MslI	CAYNNNNRTG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	233, 297, 321
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	303
PstNI	CAGNNNCTG	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	135
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	303
SduI	GDGCHC	2 cut(s)	317, 370
SetI	ASST	9 cut(s)	42, 48, 52, 76, 99, 170, 184, 261, 358
SfaNI	GCATC	3 cut(s)	91, 183, 377
SfcI	CTRYAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	135
Sse9I	AATT	3 cut(s)	15, 106, 273
SspMI	CTAG	1 cut(s)	24
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	349
TasI	AATT	3 cut(s)	15, 106, 273
TfiI	GAWTC	1 cut(s)	198
TscAI	CASTG	2 cut(s)	234, 341
TseFI	GTSAC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	234, 341
XapI	RAATTY	2 cut(s)	15, 106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.