Rh2DG093100

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001064
Physical Location & Seq
Reverse (-)
7290573 .. 7304120
13548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG093100.1

Sequence Viewer

Length: 585 bp
ATGGCAGTACTCGACTGGATTGCACTCATTCTGTGTGTTTTAGCAAGCTTTGACAACCATGTAGGCCGTGTGGGAGCTGTAGACATAGGTGTTTGCCATGGGAGGCAGGGAAATGACCTTCCTGCAGCAACAGATGTTATCAATCTCTACAAAAAACACGGCATTGCAAAAATTAGGCTCTTCGAACCTAACCATGCAGAGCTCGATGCCCTGAAAGGGAGTGGAATCGGTGTCACCAAAGAGGAGTTTTGTAAATTGCTCGAGTCGTATAAGCCGAATCTTGTATACTTGCAAGGAGAGCAGCTTGACAATGATGAAGTTGGTTCTCTTGTCTGGAGAGATGCTGATTTGTCAACTGCTGAATCTATATCCGACATCTTTGATGCCACATTGCCTACAACTGTTTATTTGGTGGTTCCAAATGGCGAAGAATTGGCAGTGGCACTTCAATCAAAGGTAATTGTAATGAGGCTCATTAAATATTCTTTCAGCTGTTTGATACCGGGAATCACTAAGAACAAGGGTGGAGAGTTTTCTTTCAGAACTGCAAAGCCCTTTTTGTTATTGTTCAGAGCAAGCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

194

Amino Acids

21.24

Weight (kDa)

5.57

Isoelectric Point (pI)

23.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 80 3.2e-10 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 81, 285
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 1 cut(s) 449
AluBI AGCT 5 cut(s) 48, 77, 202, 304, 492
AluI AGCT 5 cut(s) 48, 77, 202, 304, 492
Alw21I GWGCWC 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 2 cut(s) 125, 301
AsuC2I CCSGG 1 cut(s) 504
AsuHPI GGTGA 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 183
AvaI CYCGRG 1 cut(s) 260
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 137, 313
BceAI ACGGC 2 cut(s) 51, 175
BcgI CGANNNNNNTGC 1 cut(s) 36
BcnI CCSGG 1 cut(s) 504
BfmI CTRYAG 2 cut(s) 78, 123
BisI GCNGC 2 cut(s) 126, 302
BlsI GCNGC 2 cut(s) 127, 303
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 504
BmeT110I CYCGRG 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 504
BmsI GCATC 3 cut(s) 196, 331, 373
BpmI CTGGAG 1 cut(s) 355
Bpu14I TTCGAA 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 504
BsaJI CCNNGG 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 20
Bse3DI GCAATG 2 cut(s) 162, 389
BseDI CCNNGG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMI GCAATG 2 cut(s) 162, 389
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 137, 313
BshFI GGCC 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 216
BsnI GGCC 1 cut(s) 66
BsoBI CYCGRG 1 cut(s) 260
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 204
Bsp19I CCATGG 1 cut(s) 97
BspANI GGCC 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 417
BspMAI CTGCAG 1 cut(s) 127
BspQI GCTCTTC 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 183
BsrDI GCAATG 2 cut(s) 162, 389
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 97
BssNAI GTATAC 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 97
Bst1107I GTATAC 1 cut(s) 286
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 46, 577
BstDEI CTNAG 1 cut(s) 513
BstDSI CCRYGG 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 502
BstSFI CTRYAG 2 cut(s) 78, 123
BstV1I GCAGC 2 cut(s) 137, 313
BstZ17I GTATAC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 46, 577
Csp6I GTAC 1 cut(s) 8
CviAII CATG 3 cut(s) 59, 98, 194
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 513
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 3 cut(s) 62, 101, 197
FaiI YATR 8 cut(s) 60, 86, 99, 195, 270, 286, 368, 583
FatI CATG 3 cut(s) 58, 97, 193
FblI GTMKAC 2 cut(s) 81, 285
Fnu4HI GCNGC 2 cut(s) 126, 302
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 126, 302
GluI GCNGC 2 cut(s) 126, 302
GsuI CTGGAG 1 cut(s) 355
HaeIII GGCC 1 cut(s) 66
HapII CCGG 1 cut(s) 503
Hin1II CATG 3 cut(s) 62, 101, 197
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 5 cut(s) 225, 263, 277, 362, 507
HpaII CCGG 1 cut(s) 503
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 3 cut(s) 82, 286, 354
Hpy188I TCNGA 3 cut(s) 373, 542, 572
Hpy188III TCNNGA 1 cut(s) 334
Hpy8I GTNNAC 3 cut(s) 82, 286, 354
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 6 cut(s) 23, 125, 167, 197, 292, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 1 cut(s) 513
Hsp92II CATG 3 cut(s) 62, 101, 197
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 5 cut(s) 92, 135, 224, 319, 516
Lsp1109I GCAGC 2 cut(s) 137, 313
LweI GCATC 3 cut(s) 196, 331, 373
MaeIII GTNAC 1 cut(s) 232
MboII GAAGA 2 cut(s) 172, 440
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 4 cut(s) 171, 254, 431, 459
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 3 cut(s) 96, 235, 462
MseI TTAA 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 492
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 1 cut(s) 504
MwoI GCNNNNNNNGC 1 cut(s) 298
NciI CCSGG 1 cut(s) 504
NcoI CCATGG 1 cut(s) 97
NlaIII CATG 3 cut(s) 62, 101, 197
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 232
NspV TTCGAA 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PfeI GAWTC 4 cut(s) 225, 277, 362, 507
PkrI GCNGC 2 cut(s) 127, 303
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Psp124BI GAGCTC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 417
PspXI VCTCGAGB 1 cut(s) 260
PstI CTGCAG 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 492
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SacI GAGCTC 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 2 cut(s) 126, 302
ScaI AGTACT 1 cut(s) 9
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 504
SduI GDGCHC 1 cut(s) 204
SetI ASST 9 cut(s) 50, 79, 91, 120, 190, 204, 306, 459, 494
SfaNI GCATC 3 cut(s) 196, 331, 373
SfcI CTRYAG 2 cut(s) 78, 123
Sfr274I CTCGAG 1 cut(s) 260
SfuI TTCGAA 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 4 cut(s) 171, 254, 431, 459
SspI AATATT 1 cut(s) 482
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 502
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 4 cut(s) 12, 183, 204, 261
TasI AATT 4 cut(s) 171, 254, 431, 459
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 4 cut(s) 225, 277, 362, 507
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 1 cut(s) 444
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 2 cut(s) 125, 301
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 1 cut(s) 444
XhoI CTCGAG 1 cut(s) 260
XmiI GTMKAC 2 cut(s) 81, 285
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.