Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

49189550 .. 49190452

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019258

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGTTGTTCGATCTGGGAAATAGAGAAGGCCTTCATCGACGACCACTTTGAGCTCGCCGTTGACCTCTACACCCAGGCCATCGCCGTCGACCCCAACAACTCCGAGTTCTGTTCCTACAGCGCTCAGGCCAACATCAAATCCAATAATCTCACCGAGGCTGTAGAAAACCTAATGGGTAGACCTCTAGTGTTCTTCAGATCTTTCGGCAGCAAAAATGTCAAAATTGGGGCTAAGAAGGTTTCTAGGACTTTGGTCTGTAAGGCTGTTCTTTGGTGGAAGATATGGGGGTCGAAGATTTGGGATTTCAGAAGGTCCAAGGACCAGTTGGGACTGTCACTGAAGGAGAGAATTCCTCCAAGGAAAATGGGAAACTGGAAGAAGGGTCAGGCCATAATGAGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

136

Amino Acids

15.43

Weight (kDa)

9.6

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 181
AcsI	RAATTY	1 cut(s)	351
AcuI	CTGAAG	2 cut(s)	181, 362
AfeI	AGCGCT	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw21I	GWGCWC	1 cut(s)	57
Aor51HI	AGCGCT	1 cut(s)	124
AoxI	GGCC	4 cut(s)	30, 78, 129, 390
ApeKI	GCWGC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	351
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	315, 322
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	315, 322
BanII	GRGCYC	2 cut(s)	57, 404
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	2 cut(s)	44, 71
BciT130I	CCWGG	1 cut(s)	77
BfaI	CTAG	2 cut(s)	188, 246
BfmI	CTRYAG	2 cut(s)	118, 162
BfoI	RGCGCY	1 cut(s)	126
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	2 cut(s)	315, 322
BmgT120I	GGNCC	2 cut(s)	315, 322
BmrFI	CCNGG	1 cut(s)	77
BoxI	GACNNNNGTC	1 cut(s)	254
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
Bpu10I	CCTNAGC	1 cut(s)	126
BsaJI	CCNNGG	4 cut(s)	75, 156, 318, 359
Bse1I	ACTGG	2 cut(s)	325, 380
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	4 cut(s)	75, 156, 318, 359
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	2 cut(s)	325, 380
BseXI	GCAGC	1 cut(s)	222
BshFI	GGCC	4 cut(s)	32, 80, 131, 392
BsiHKAI	GWGCWC	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	4 cut(s)	32, 80, 131, 392
Bsp1286I	GDGCHC	2 cut(s)	57, 404
Bsp143I	GATC	2 cut(s)	12, 200
BspANI	GGCC	4 cut(s)	32, 80, 131, 392
BspCNI	CTCAG	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	325, 380
BssECI	CCNNGG	4 cut(s)	75, 156, 318, 359
BssMI	GATC	2 cut(s)	12, 200
BssT1I	CCWWGG	2 cut(s)	318, 359
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	126, 234
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	2 cut(s)	15, 203
BstMBI	GATC	2 cut(s)	12, 200
BstNI	CCWGG	1 cut(s)	77
BstPAI	GACNNNNGTC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	2 cut(s)	118, 162
BstV1I	GCAGC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BsuRI	GGCC	4 cut(s)	32, 80, 131, 392
BtgZI	GCGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	315, 322
CviJI	RGCY	9 cut(s)	32, 55, 80, 131, 161, 233, 266, 392, 402
CviKI_1	RGCY	9 cut(s)	32, 55, 80, 131, 161, 233, 266, 392, 402
DdeI	CTNAG	2 cut(s)	126, 234
DpnI	GATC	2 cut(s)	14, 202
DpnII	GATC	2 cut(s)	12, 200
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	318, 359
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	57, 404
Eco47I	GGWCC	2 cut(s)	315, 322
Eco47III	AGCGCT	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	2 cut(s)	181, 362
EcoICRI	GAGCTC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	2 cut(s)	318, 359
EcoT38I	GRGCYC	2 cut(s)	57, 404
ErhI	CCWWGG	2 cut(s)	318, 359
FaiI	YATR	3 cut(s)	286, 395, 406
FaqI	GGGAC	1 cut(s)	345
FblI	GTMKAC	2 cut(s)	90, 181
Fnu4HI	GCNGC	1 cut(s)	211
FriOI	GRGCYC	2 cut(s)	57, 404
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	2 cut(s)	188, 246
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	4 cut(s)	32, 80, 131, 392
HhaI	GCGC	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	2 cut(s)	64, 91
HindII	GTYRAC	2 cut(s)	64, 91
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	3 cut(s)	64, 91, 182
Hpy188I	TCNGA	3 cut(s)	106, 200, 311
Hpy8I	GTNNAC	3 cut(s)	64, 91, 182
Hpy99I	CGWCG	2 cut(s)	44, 92
HpyAV	CCTTC	6 cut(s)	22, 43, 232, 306, 337, 376
HpyCH4III	ACNGT	1 cut(s)	336
HpyF3I	CTNAG	2 cut(s)	126, 234
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	12, 200
LpnPI	CCDG	6 cut(s)	62, 89, 113, 338, 361, 374
Lsp1109I	GCAGC	1 cut(s)	222
MaeI	CTAG	2 cut(s)	188, 246
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	2 cut(s)	14, 202
MboI	GATC	2 cut(s)	12, 200
MboII	GAAGA	4 cut(s)	187, 292, 307, 391
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	2 cut(s)	57, 404
MluCI	AATT	2 cut(s)	225, 351
MnlI	CCTC	4 cut(s)	77, 151, 195, 366
MroXI	GAANNNNTTC	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
NdeII	GATC	2 cut(s)	12, 200
NmuCI	GTSAC	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	212
PshAI	GACNNNNGTC	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	315, 322
PsuI	RGATCY	1 cut(s)	200
SacI	GAGCTC	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	89
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	2 cut(s)	12, 200
Sau96I	GGNCC	2 cut(s)	315, 322
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	57, 404
SetI	ASST	6 cut(s)	57, 69, 174, 187, 243, 317
SfcI	CTRYAG	2 cut(s)	118, 162
SinI	GGWCC	2 cut(s)	315, 322
Sse9I	AATT	2 cut(s)	225, 351
SseBI	AGGCCT	1 cut(s)	32
SspMI	CTAG	2 cut(s)	188, 246
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	2 cut(s)	318, 359
TaaI	ACNGT	1 cut(s)	336
TaqI	TCGA	4 cut(s)	11, 39, 90, 293
TasI	AATT	2 cut(s)	225, 351
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	336
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	336
TspDTI	ATGAA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	345
VpaK11BI	GGWCC	2 cut(s)	315, 322
XapI	RAATTY	1 cut(s)	351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmiI	GTMKAC	2 cut(s)	90, 181
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	188, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.