Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

83288549 .. 83291033

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036676

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGGGAAAGAGATCAAGAGGTTGCGGCAGAGGAAGGGGCTGTCGTGGTGGTGGCAGCGGCTTTGGCAAAGCTAGAGTTGATGCACTCAATATATTATTGTTCTGAAGGTATCGAAGGCTTCAACAAGCTCAGAAGGTCATACTCGATAGACCCTCCACATAATCAAACTAGCCCAGATCTCAACGAAGGCTTTCATCGAGACCACTTTGAGCTCGCCGTTGACCTCTACACCCAGGCCATCGCCGTCGACCCCAACAACTCCGAGTTCTACTCCGCGCTCAGGCCCACATCAAATCCAACAATCTCACCGATCTTTCAGCAGTGGCGTGTTGCTTTCGGCGGATTCGAAATTCAGCTTTGGATAACTAAGAAGGATTCTGGGACTTTGGTCTGTAAGGCTGTTCTTTGGTGGAAGATATGGGGGTCGAAGATTTGGGATTTGAGAAGGTCCAAGGACCAGTTCGGACTATCATTGAAGGAGAGAATTCTGCCAAGGAAAATGGGAAACAGGAAGAAGGGTCAGGCCATAATGAGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

181

Amino Acids

20.6

Weight (kDa)

8.87

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	278
AciI	CCGC	4 cut(s)	26, 59, 276, 342
AcsI	RAATTY	2 cut(s)	351, 486
AcuI	CTGAAG	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	2 cut(s)	124, 478
AjnI	CCWGG	1 cut(s)	234
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	4 cut(s)	73, 130, 214, 358
AluI	AGCT	4 cut(s)	73, 130, 214, 358
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	195
AoxI	GGCC	3 cut(s)	237, 284, 525
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	351, 486
Asp700I	GAANNNNTTC	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	3 cut(s)	285, 450, 457
AsuHPI	GGTGA	1 cut(s)	300
AsuII	TTCGAA	1 cut(s)	348
AvaII	GGWCC	2 cut(s)	450, 457
BanII	GRGCYC	2 cut(s)	216, 539
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	2 cut(s)	203, 230
BciT130I	CCWGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	2 cut(s)	74, 171
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	3 cut(s)	27, 57, 60
BlsI	GCNGC	3 cut(s)	28, 58, 61
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	2 cut(s)	450, 457
BmgT120I	GGNCC	3 cut(s)	285, 450, 457
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	72
BoxI	GACNNNNGTC	1 cut(s)	389
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
Bpu10I	CCTNAGC	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	234, 453, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	234, 453, 494
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	145, 295
BseNI	ACTGG	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	3 cut(s)	239, 286, 527
BsiHKAI	GWGCWC	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	239, 286, 527
Bso31I	GGTCTC	1 cut(s)	195
Bsp119I	TTCGAA	1 cut(s)	348
Bsp1286I	GDGCHC	2 cut(s)	216, 539
Bsp143I	GATC	3 cut(s)	13, 178, 312
BspACI	CCGC	4 cut(s)	26, 59, 276, 342
BspANI	GGCC	3 cut(s)	239, 286, 527
BspCNI	CTCAG	2 cut(s)	144, 294
BspFNI	CGCG	1 cut(s)	278
BspT104I	TTCGAA	1 cut(s)	348
BspTNI	GGTCTC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	3 cut(s)	234, 453, 494
BssMI	GATC	3 cut(s)	13, 178, 312
BssT1I	CCWWGG	2 cut(s)	453, 494
Bst2UI	CCWGG	1 cut(s)	236
BstBI	TTCGAA	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	131, 281, 369
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	3 cut(s)	16, 181, 315
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	3 cut(s)	13, 178, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	236
BstPAI	GACNNNNGTC	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	3 cut(s)	239, 286, 527
BtgZI	GCGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	3 cut(s)	285, 450, 457
DdeI	CTNAG	3 cut(s)	131, 281, 369
DpnI	GATC	3 cut(s)	15, 180, 314
DpnII	GATC	3 cut(s)	13, 178, 312
EciI	GGCGGA	1 cut(s)	357
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	453, 494
Eco24I	GRGCYC	2 cut(s)	216, 539
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	450, 457
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	453, 494
EcoT38I	GRGCYC	2 cut(s)	216, 539
ErhI	CCWWGG	2 cut(s)	453, 494
FaiI	YATR	6 cut(s)	94, 142, 162, 421, 530, 541
FaqI	GGGAC	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	27, 57, 60
FriOI	GRGCYC	2 cut(s)	216, 539
Fsp4HI	GCNGC	3 cut(s)	27, 57, 60
FspBI	CTAG	2 cut(s)	74, 171
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	3 cut(s)	27, 57, 60
HaeIII	GGCC	3 cut(s)	239, 286, 527
HhaI	GCGC	1 cut(s)	280
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HincII	GTYRAC	2 cut(s)	223, 250
HindII	GTYRAC	2 cut(s)	223, 250
HinfI	GANTC	2 cut(s)	345, 377
HphI	GGTGA	1 cut(s)	300
Hpy166II	GTNNAC	2 cut(s)	223, 250
Hpy188I	TCNGA	4 cut(s)	106, 134, 265, 467
Hpy188III	TCNNGA	2 cut(s)	17, 200
Hpy8I	GTNNAC	2 cut(s)	223, 250
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	9 cut(s)	29, 101, 110, 129, 182, 367, 441, 472, 511
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	3 cut(s)	131, 281, 369
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	13, 178, 312
LpnPI	CCDG	8 cut(s)	189, 221, 248, 268, 366, 473, 496, 509
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	74, 171
MalI	GATC	3 cut(s)	15, 180, 314
MboI	GATC	3 cut(s)	13, 178, 312
MboII	GAAGA	3 cut(s)	427, 442, 526
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	216, 539
MluCI	AATT	2 cut(s)	351, 486
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	4 cut(s)	13, 25, 165, 236
MroXI	GAANNNNTTC	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	3 cut(s)	13, 178, 312
NspV	TTCGAA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	345, 377
PkrI	GCNGC	3 cut(s)	28, 58, 61
PshAI	GACNNNNGTC	1 cut(s)	389
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspPI	GGNCC	3 cut(s)	285, 450, 457
PsuI	RGATCY	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	216
SalI	GTCGAC	1 cut(s)	248
SatI	GCNGC	3 cut(s)	27, 57, 60
Sau3AI	GATC	3 cut(s)	13, 178, 312
Sau96I	GGNCC	3 cut(s)	285, 450, 457
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	2 cut(s)	216, 539
SetI	ASST	9 cut(s)	24, 75, 112, 132, 140, 216, 228, 360, 452
SfaNI	GCATC	1 cut(s)	72
SfuI	TTCGAA	1 cut(s)	348
SinI	GGWCC	2 cut(s)	450, 457
Sse9I	AATT	2 cut(s)	351, 486
SsiI	CCGC	4 cut(s)	26, 59, 276, 342
SspMI	CTAG	2 cut(s)	74, 171
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	2 cut(s)	453, 494
TaqI	TCGA	6 cut(s)	114, 146, 199, 249, 348, 428
TasI	AATT	2 cut(s)	351, 486
TauI	GCSGC	2 cut(s)	29, 62
TfiI	GAWTC	2 cut(s)	345, 377
TscAI	CASTG	1 cut(s)	329
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	450, 457
XapI	RAATTY	2 cut(s)	351, 486
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	2 cut(s)	74, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.