Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000359.1

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

160651 .. 161617

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000359.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ctgggatatagcaaaggccttcatcgagaccactctgagctcgccgttgacctctacacccaggccatcgccgtcgaacccaaaaactccgagttctactccgatcgcactcaggccaacatcaaatccaacaatctcaccggtaacaaccccctctctcttgcaatttctgaagccgcgaccaaacggcaagacacaagttgtcaccggcatgcctactccccccacttcaagctagtacccgtggatcacggcgatttggccggagaagtgagaatcgacggcaagaagcaaactgtagcagattggggttttccggcaattcttctgattccggcagtctccggctaccaaaccggcgtcgaaggttcggtttttgacaaggatcattttgcccctagccttgagccacgatttacagtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

141

Amino Acids

15.46

Weight (kDa)

6.15

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	179
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	2 cut(s)	255, 393
AcoI	YGGCCR	1 cut(s)	261
AcuI	CTGAAG	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	1 cut(s)	240
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	2 cut(s)	40, 235
AluI	AGCT	2 cut(s)	40, 235
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	21, 346
AlwI	GGATC	2 cut(s)	255, 393
AoxI	GGCC	4 cut(s)	16, 63, 114, 261
AsiGI	ACCGGT	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	130, 197
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	42
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	5 cut(s)	29, 56, 203, 268, 298
BciT130I	CCWGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	21, 346
BfaI	CTAG	2 cut(s)	236, 399
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpuEI	CTTGAG	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	60, 243
BsaWI	WCCGGW	1 cut(s)	140
Bse118I	RCCGGY	3 cut(s)	140, 207, 356
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	60, 243
BseMII	CTCAG	2 cut(s)	27, 125
Bsh1236I	CGCG	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	4 cut(s)	18, 65, 116, 263
BshTI	ACCGGT	1 cut(s)	140
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	7 cut(s)	141, 208, 264, 317, 335, 345, 357
BsmAI	GTCTC	2 cut(s)	21, 346
BsnI	GGCC	4 cut(s)	18, 65, 116, 263
Bso31I	GGTCTC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	103, 247, 385
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	4 cut(s)	18, 65, 116, 263
BspCNI	CTCAG	2 cut(s)	28, 124
BspFNI	CGCG	1 cut(s)	179
BspPI	GGATC	2 cut(s)	255, 393
BspTNI	GGTCTC	1 cut(s)	21
BsrFI	RCCGGY	3 cut(s)	140, 207, 356
BssAI	RCCGGY	3 cut(s)	140, 207, 356
BssECI	CCNNGG	2 cut(s)	60, 243
BssMI	GATC	3 cut(s)	103, 247, 385
BssNI	GRCGYC	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	298, 421
BstACI	GRCGYC	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	42, 213
BstDEI	CTNAG	2 cut(s)	36, 111
BstDSI	CCRYGG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	3 cut(s)	106, 250, 388
BstMAI	GTCTC	2 cut(s)	21, 346
BstMBI	GATC	3 cut(s)	103, 247, 385
BstMCI	CGRYCG	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	179
BsuRI	GGCC	4 cut(s)	18, 65, 116, 263
BtgI	CCRYGG	1 cut(s)	243
BtgZI	GCGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	42, 213
Cfr10I	RCCGGY	3 cut(s)	140, 207, 356
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	239
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	1 cut(s)	212
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	2 cut(s)	36, 111
DpnI	GATC	3 cut(s)	105, 249, 387
DpnII	GATC	3 cut(s)	103, 247, 385
EaeI	YGGCCR	1 cut(s)	261
Ecl136II	GAGCTC	1 cut(s)	40
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	1 cut(s)	215
FaiI	YATR	2 cut(s)	9, 213
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	177
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	2 cut(s)	236, 399
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	4 cut(s)	18, 65, 116, 263
HapII	CCGG	7 cut(s)	141, 208, 264, 317, 335, 345, 357
HgaI	GACGC	1 cut(s)	349
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	276, 331
HpaII	CCGG	7 cut(s)	141, 208, 264, 317, 335, 345, 357
HphI	GGTGA	2 cut(s)	130, 197
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	5 cut(s)	37, 91, 103, 172, 330
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	3 cut(s)	77, 284, 365
HpyAV	CCTTC	2 cut(s)	29, 359
HpyCH4III	ACNGT	2 cut(s)	298, 421
HpyCH4V	TGCA	1 cut(s)	164
HpyF3I	CTNAG	2 cut(s)	36, 111
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	1 cut(s)	215
Kzo9I	GATC	3 cut(s)	103, 247, 385
MaeI	CTAG	2 cut(s)	236, 399
MaeIII	GTNAC	2 cut(s)	143, 203
MalI	GATC	3 cut(s)	105, 249, 387
MboI	GATC	3 cut(s)	103, 247, 385
MboII	GAAGA	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	2 cut(s)	165, 321
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	2 cut(s)	62, 164
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	7 cut(s)	141, 208, 264, 317, 335, 345, 357
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
MvnI	CGCG	1 cut(s)	179
NdeII	GATC	3 cut(s)	103, 247, 385
NlaIII	CATG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	276, 331
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	178
Ple19I	CGATCG	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PvuI	CGATCG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	42
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	3 cut(s)	103, 247, 385
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	4 cut(s)	42, 54, 237, 370
SfcI	CTRYAG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	165, 321
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	2 cut(s)	236, 399
SstI	GAGCTC	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	298, 421
TaqI	TCGA	4 cut(s)	25, 75, 279, 363
TasI	AATT	2 cut(s)	165, 321
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	276, 331
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	11
TspRI	CASTG	1 cut(s)	426
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	2 cut(s)	236, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.