Rmu_sc0001329.1_g000015

Protein SGT1 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001329.1
Physical Location & Seq
Reverse (-)
44646 .. 44888
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001329.1_g000015.1.cds

Sequence Viewer

Length: 243 bp
atgggttattcaatctgggaaatagcaaaggccttcatcgacgaccacgccgagctcactgctgacctctacacccaggccatcattgtcgaccccaacaactccgagctctactccgaccgcactcaggccaacatcaaatccaacaatctcactagtaaaaacccctcctctctctctctctctcttgcaattttcgaagcctattcttcgtcgtcttcttgttttgtttctgagacctaa

Protein Analysis

80

Amino Acids

8.79

Weight (kDa)

4.28

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 12
AhlI ACTAGT 1 cut(s) 155
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 2 cut(s) 55, 109
AluI AGCT 2 cut(s) 55, 109
Alw21I GWGCWC 2 cut(s) 57, 111
Alw26I GTCTC 1 cut(s) 230
AoxI GGCC 3 cut(s) 30, 78, 129
AsuII TTCGAA 1 cut(s) 198
BanII GRGCYC 2 cut(s) 57, 111
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 2 cut(s) 57, 111
BccI CCATC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 230
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 98, 130
Bpu14I TTCGAA 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 140, 225
BseRI GAGGAG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 3 cut(s) 32, 80, 131
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 57, 111
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 3 cut(s) 32, 80, 131
Bso31I GGTCTC 1 cut(s) 230
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 57, 111
BspACI CCGC 1 cut(s) 121
BspANI GGCC 3 cut(s) 32, 80, 131
BspCNI CTCAG 2 cut(s) 139, 226
BspT104I TTCGAA 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 126, 234
BstMAI GTCTC 1 cut(s) 230
BstMCI CGRYCG 1 cut(s) 121
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 3 cut(s) 32, 80, 131
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
CviJI RGCY 6 cut(s) 32, 55, 80, 109, 131, 203
CviKI_1 RGCY 6 cut(s) 32, 55, 80, 109, 131, 203
DdeI CTNAG 2 cut(s) 126, 234
Ecl136II GAGCTC 2 cut(s) 55, 109
Eco147I AGGCCT 1 cut(s) 32
Eco24I GRGCYC 2 cut(s) 57, 111
Eco31I GGTCTC 1 cut(s) 230
Eco53kI GAGCTC 2 cut(s) 55, 109
EcoICRI GAGCTC 2 cut(s) 55, 109
EcoRII CCWGG 1 cut(s) 75
EcoT38I GRGCYC 2 cut(s) 57, 111
FblI GTMKAC 1 cut(s) 90
FriOI GRGCYC 2 cut(s) 57, 111
FspBI CTAG 1 cut(s) 156
HaeIII GGCC 3 cut(s) 32, 80, 131
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 106, 118, 235
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 2 cut(s) 44, 217
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 126, 234
LpnPI CCDG 3 cut(s) 62, 89, 113
MaeI CTAG 1 cut(s) 156
MboII GAAGA 2 cut(s) 201, 210
MhlI GDGCHC 2 cut(s) 57, 111
MluCI AATT 1 cut(s) 192
MmeI TCCRAC 2 cut(s) 141, 168
MnlI CCTC 3 cut(s) 77, 178, 181
MspR9I CCNGG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 77
NmeAIII GCCGAG 1 cut(s) 76
NspV TTCGAA 1 cut(s) 198
PceI AGGCCT 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 48
Psp124BI GAGCTC 2 cut(s) 57, 111
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
SacI GAGCTC 2 cut(s) 57, 111
SalI GTCGAC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 2 cut(s) 57, 111
SetI ASST 4 cut(s) 57, 69, 111, 242
SfuI TTCGAA 1 cut(s) 198
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 1 cut(s) 192
SseBI AGGCCT 1 cut(s) 32
SsiI CCGC 1 cut(s) 121
SspMI CTAG 1 cut(s) 156
SstI GAGCTC 2 cut(s) 57, 111
StuI AGGCCT 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 75
TaqI TCGA 3 cut(s) 39, 90, 198
TasI AATT 1 cut(s) 192
TscAI CASTG 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 25
TspRI CASTG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.