Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Forward (+)

65953474 .. 65957453

Gene Structure 3980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG433700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCTTCCGATCTCGAAAAGCAGGCCAAGGAGGCCCTCATCGATGACCACTTCGAGCTCGCCGTTGACCTCTACACCCAGGCCATCGCCATCGATCCCAACAACTCCGAGCTCTACTCCGACCGCGCTCAGGCCAACATCAAAGCCAAGAATCTCACCGAGGCGGTTGCGGATGCGAACAAGGCGATTGAATTGGACGCGTCTTTGTACAAGGCCTACTTGCGCAAGGGAATTGCCTGCCTGAAGCTTGAGGAATATCAGACTGCAAAGGCAGCATTGGAACTTGGTGCTTCTTATGCTCCAGAGGAACCTAGATTCGCTAATCTGATAAAAGAGTGTGATGAGCTCATAGCAGCGGAAAATAACGAGCTACCAAAGCAACCAATGGAAACAACCACTACAGAGAGTGTTACAGCCGCAAAAGATGTTGAGCCAGTGAACCCGCCTTCCGATCAGGTGACAGTAGCACCTGTCAAACCAAAATACAGGCATGAATTCTACCAGAAGCCTGAAGAAGTGGTCGTGACTATATTTGCAAAGGGCATACCAGCCAAAGATGTTGCTGTTGAATTTGGTGAACAAATATTAAGTGTCAGCATTGATGTTCCTGGTGAAGATACATATCATTTTCAGCCTCGCCTGTTTGGGAAGATCATTCCTGAAAAGTGCAGATTTGATGTTTTGTCTACCAAGGTTGAAATTCGCCTGGCCAAAGCTGAATCCATACAGTGGACATCTCTTGAGTTCAGCAAGGATAACCTTGTTCCTCTAAAGGTCAATGCCCCAGTTATTGGAGCCCAAAGGCCATCTTACCCATCCTCCAAACCAAAGCGGGTAGATTGGGACAAGCTCGAAGCCGAAGTGAAGAAGGAGGTTTGCCTTTTATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

296

Amino Acids

32.94

Weight (kDa)

4.96

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	163 - 238	1.8e-12	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	224
AccB7I	CCANNNNNTGG	2 cut(s)	729, 791
AccI	GTMKAC	1 cut(s)	686
AccII	CGCG	2 cut(s)	126, 200
AciI	CCGC	7 cut(s)	124, 164, 170, 356, 417, 443, 832
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	708
AcsI	RAATTY	3 cut(s)	494, 569, 699
AcuI	CTGAAG	2 cut(s)	263, 531
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	130, 729, 791
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	3 cut(s)	191, 569, 698
AjnI	CCWGG	3 cut(s)	78, 607, 705
AloI	GAACNNNNNNTCC	2 cut(s)	431, 463
AluBI	AGCT	7 cut(s)	58, 112, 247, 346, 370, 716, 850
AluI	AGCT	7 cut(s)	58, 112, 247, 346, 370, 716, 850
Alw21I	GWGCWC	3 cut(s)	60, 114, 348
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	7 cut(s)	24, 33, 81, 132, 213, 708, 803
ApeKI	GCWGC	2 cut(s)	272, 353
ApoI	RAATTY	3 cut(s)	494, 569, 699
AspLEI	GCGC	2 cut(s)	128, 225
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	4 cut(s)	148, 469, 587, 623
BalI	TGGCCA	1 cut(s)	710
BanII	GRGCYC	4 cut(s)	60, 114, 348, 799
Bbv12I	GWGCWC	3 cut(s)	60, 114, 348
BbvI	GCAGC	2 cut(s)	284, 365
BccI	CCATC	4 cut(s)	92, 98, 814, 823
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	3 cut(s)	80, 609, 707
BfaI	CTAG	2 cut(s)	312, 889
BfmI	CTRYAG	1 cut(s)	399
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	273, 354, 417
BlsI	GCNGC	3 cut(s)	274, 355, 418
Bme1390I	CCNGG	3 cut(s)	80, 609, 707
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	309, 796
BmrFI	CCNGG	3 cut(s)	80, 609, 707
BmrI	ACTGGG	1 cut(s)	779
BmsI	GCATC	1 cut(s)	163
BmuI	ACTGGG	1 cut(s)	779
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpmI	CTGGAG	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	2 cut(s)	269, 761
Bsa29I	ATCGAT	2 cut(s)	42, 93
BsaBI	GATNNNNATC	1 cut(s)	621
BsaJI	CCNNGG	4 cut(s)	27, 78, 159, 690
BsaXI	ACNNNNNCTCC	2 cut(s)	803, 833
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 729, 791
Bse1I	ACTGG	2 cut(s)	434, 785
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	3 cut(s)	80, 609, 707
BseCI	ATCGAT	2 cut(s)	42, 93
BseDI	CCNNGG	4 cut(s)	27, 78, 159, 690
BseGI	GGATG	2 cut(s)	178, 815
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	3 cut(s)	130, 729, 791
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	434, 785
BseXI	GCAGC	2 cut(s)	284, 365
BsgI	GTGCAG	1 cut(s)	688
Bsh1236I	CGCG	2 cut(s)	126, 200
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	7 cut(s)	26, 35, 83, 134, 215, 710, 805
BshVI	ATCGAT	2 cut(s)	42, 93
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	3 cut(s)	60, 114, 348
BslFI	GGGAC	1 cut(s)	857
BslI	CCNNNNNNNGG	3 cut(s)	130, 729, 791
BsmFI	GGGAC	1 cut(s)	857
BsnI	GGCC	7 cut(s)	26, 35, 83, 134, 215, 710, 805
Bsp1286I	GDGCHC	4 cut(s)	60, 114, 348, 799
Bsp1407I	TGTACA	1 cut(s)	207
Bsp143I	GATC	4 cut(s)	10, 94, 451, 651
BspACI	CCGC	7 cut(s)	124, 164, 170, 356, 417, 443, 832
BspANI	GGCC	7 cut(s)	26, 35, 83, 134, 215, 710, 805
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	2 cut(s)	42, 93
BspFNI	CGCG	2 cut(s)	126, 200
BspLI	GGNNCC	2 cut(s)	309, 796
BspPI	GGATC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	434, 785
BssECI	CCNNGG	4 cut(s)	27, 78, 159, 690
BssMI	GATC	4 cut(s)	10, 94, 451, 651
BssT1I	CCWWGG	2 cut(s)	27, 690
Bst2UI	CCWGG	3 cut(s)	80, 609, 707
Bst4CI	ACNGT	2 cut(s)	463, 729
BstAUI	TGTACA	1 cut(s)	207
BstC8I	GCNNGC	3 cut(s)	24, 60, 238
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	178, 815
BstFNI	CGCG	2 cut(s)	126, 200
BstHHI	GCGC	2 cut(s)	128, 225
BstKTI	GATC	4 cut(s)	13, 97, 454, 654
BstMBI	GATC	4 cut(s)	10, 94, 451, 651
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 182, 272, 296, 376
BstNI	CCWGG	3 cut(s)	80, 609, 707
BstSCI	CCNGG	3 cut(s)	78, 607, 705
BstSFI	CTRYAG	1 cut(s)	399
BstUI	CGCG	2 cut(s)	126, 200
BstV1I	GCAGC	2 cut(s)	284, 365
Bsu15I	ATCGAT	2 cut(s)	42, 93
BsuRI	GGCC	7 cut(s)	26, 35, 83, 134, 215, 710, 805
BsuTUI	ATCGAT	2 cut(s)	42, 93
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	178, 815
BtsIMutI	CAGTG	2 cut(s)	441, 734
Cac8I	GCNNGC	3 cut(s)	24, 60, 238
CfoI	GCGC	2 cut(s)	128, 225
Cfr13I	GGNCC	1 cut(s)	34
ClaI	ATCGAT	2 cut(s)	42, 93
CseI	GACGC	2 cut(s)	189, 206
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	491
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	4 cut(s)	12, 96, 453, 653
DpnII	GATC	4 cut(s)	10, 94, 451, 651
EaeI	YGGCCR	1 cut(s)	708
Ecl136II	GAGCTC	3 cut(s)	58, 112, 346
Eco130I	CCWWGG	2 cut(s)	27, 690
Eco147I	AGGCCT	1 cut(s)	215
Eco24I	GRGCYC	4 cut(s)	60, 114, 348, 799
Eco53kI	GAGCTC	3 cut(s)	58, 112, 346
Eco57I	CTGAAG	2 cut(s)	263, 531
EcoICRI	GAGCTC	3 cut(s)	58, 112, 346
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	3 cut(s)	78, 607, 705
EcoT14I	CCWWGG	2 cut(s)	27, 690
EcoT38I	GRGCYC	4 cut(s)	60, 114, 348, 799
ErhI	CCWWGG	2 cut(s)	27, 690
FaeI	CATG	1 cut(s)	494
FaiI	YATR	7 cut(s)	297, 350, 492, 530, 545, 622, 725
FalI	AAGNNNNNCTT	4 cut(s)	203, 235, 793, 825
FaqI	GGGAC	1 cut(s)	857
FatI	CATG	1 cut(s)	490
FauI	CCCGC	2 cut(s)	450, 825
FblI	GTMKAC	1 cut(s)	686
Fnu4HI	GCNGC	3 cut(s)	273, 354, 417
FokI	GGATG	2 cut(s)	185, 802
FriOI	GRGCYC	4 cut(s)	60, 114, 348, 799
Fsp4HI	GCNGC	3 cut(s)	273, 354, 417
FspBI	CTAG	2 cut(s)	312, 889
FspI	TGCGCA	1 cut(s)	224
GlaI	GCGC	2 cut(s)	127, 224
GluI	GCNGC	3 cut(s)	273, 354, 417
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	7 cut(s)	26, 35, 83, 134, 215, 710, 805
HgaI	GACGC	2 cut(s)	189, 206
HhaI	GCGC	2 cut(s)	128, 225
Hin1II	CATG	1 cut(s)	494
Hin6I	GCGC	2 cut(s)	126, 223
HinP1I	GCGC	2 cut(s)	126, 223
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	3 cut(s)	151, 315, 719
HphI	GGTGA	4 cut(s)	148, 469, 587, 623
Hpy166II	GTNNAC	5 cut(s)	67, 439, 578, 687, 732
Hpy188I	TCNGA	6 cut(s)	10, 109, 121, 261, 327, 451
Hpy188III	TCNNGA	5 cut(s)	14, 302, 523, 659, 740
Hpy8I	GTNNAC	5 cut(s)	67, 439, 578, 687, 732
HpyAV	CCTTC	2 cut(s)	456, 862
HpyCH4III	ACNGT	2 cut(s)	463, 729
HpyCH4V	TGCA	3 cut(s)	266, 536, 669
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 182, 272, 296, 376
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	494
HspAI	GCGC	2 cut(s)	126, 223
Kzo9I	GATC	4 cut(s)	10, 94, 451, 651
LmnI	GCTCC	2 cut(s)	304, 794
Lsp1109I	GCAGC	2 cut(s)	284, 365
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	312, 889
MaeIII	GTNAC	3 cut(s)	409, 457, 523
MalI	GATC	4 cut(s)	12, 96, 453, 653
MboI	GATC	4 cut(s)	10, 94, 451, 651
MboII	GAAGA	4 cut(s)	524, 626, 661, 877
MhlI	GDGCHC	4 cut(s)	60, 114, 348, 799
MlsI	TGGCCA	1 cut(s)	710
MluCI	AATT	5 cut(s)	191, 231, 494, 569, 699
MluI	ACGCGT	1 cut(s)	198
MluNI	TGGCCA	1 cut(s)	710
MmeI	TCCRAC	1 cut(s)	144
Mox20I	TGGCCA	1 cut(s)	710
MscI	TGGCCA	1 cut(s)	710
MseI	TTAA	1 cut(s)	587
Msp20I	TGGCCA	1 cut(s)	710
MspA1I	CMGCKG	1 cut(s)	356
MspR9I	CCNGG	3 cut(s)	80, 609, 707
MvaI	CCWGG	3 cut(s)	80, 609, 707
MvnI	CGCG	2 cut(s)	126, 200
MwoI	GCNNNNNNNGC	5 cut(s)	32, 182, 272, 296, 376
NdeII	GATC	4 cut(s)	10, 94, 451, 651
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	2 cut(s)	309, 796
NmuCI	GTSAC	2 cut(s)	457, 523
NsbI	TGCGCA	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	151, 315, 719
PflMI	CCANNNNNTGG	2 cut(s)	729, 791
PkrI	GCNGC	3 cut(s)	274, 355, 418
Psp124BI	GAGCTC	3 cut(s)	60, 114, 348
Psp6I	CCWGG	3 cut(s)	78, 607, 705
PspGI	CCWGG	3 cut(s)	78, 607, 705
PspN4I	GGNNCC	2 cut(s)	309, 796
PspPI	GGNCC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	3 cut(s)	60, 114, 348
SaqAI	TTAA	1 cut(s)	587
SatI	GCNGC	3 cut(s)	273, 354, 417
Sau3AI	GATC	4 cut(s)	10, 94, 451, 651
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	3 cut(s)	80, 609, 707
SduI	GDGCHC	4 cut(s)	60, 114, 348, 799
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	399
SfiI	GGCCNNNNNGGCC	1 cut(s)	32
SmlI	CTYRAG	2 cut(s)	248, 740
SmoI	CTYRAG	2 cut(s)	248, 740
Sse9I	AATT	5 cut(s)	191, 231, 494, 569, 699
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	7 cut(s)	124, 164, 170, 356, 417, 443, 832
SspI	AATATT	1 cut(s)	585
SspMI	CTAG	2 cut(s)	312, 889
SstI	GAGCTC	3 cut(s)	60, 114, 348
StuI	AGGCCT	1 cut(s)	215
StyD4I	CCNGG	3 cut(s)	78, 607, 705
StyI	CCWWGG	2 cut(s)	27, 690
TaaI	ACNGT	2 cut(s)	463, 729
TaqI	TCGA	5 cut(s)	15, 42, 54, 93, 852
TasI	AATT	5 cut(s)	191, 231, 494, 569, 699
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	3 cut(s)	151, 315, 719
Tru1I	TTAA	1 cut(s)	587
Tru9I	TTAA	1 cut(s)	587
TscAI	CASTG	2 cut(s)	441, 734
TseFI	GTSAC	2 cut(s)	457, 523
TseI	GCWGC	2 cut(s)	272, 353
Tsp45I	GTSAC	2 cut(s)	457, 523
TspDTI	ATGAA	1 cut(s)	507
TspRI	CASTG	2 cut(s)	441, 734
Van91I	CCANNNNNTGG	2 cut(s)	729, 791
XapI	RAATTY	3 cut(s)	494, 569, 699
XmiI	GTMKAC	1 cut(s)	686
XspI	CTAG	2 cut(s)	312, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.