Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

54566967 .. 54603952

Gene Structure 36986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG401500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAATGGGTCTTGGTCGTTGTTTGGGAGCAAGAATGAATCTGGTGGTGTAGTTGTGGGTGAGCCGACCCATAACCCAATCCTTGGAGTACTGTACTTCGGCACAAAGGGTGTGGTCTATTCCCAACATGGTCCTTATTGGCGCCATATTAGGAAGCTCATCACCCTTCATTTCTTGTGTCCAACGAAAATTGAGGCTTTCGAGCCGCTGCGGAAGAAGGAACTAGGAGTGCTGGTAAGAAAGCTGAAAAGAGCTGCAGAGAAAGGTGAAGTTGTAAATGTTAGTGAGAAGATTGGTGCGATGAATGTGGACCTAACGTATAGGATGGTGTTGGGTCGTAAAAATGATGATAGGTTTGATTTAAAAGCCATTGTTGAGGAAATATTATTCTTGATTGGGGCTTTCAACATATCTGATTTTGTTCCTACCCTTGCTGCACTTGATATTCAGGGATTGACTAAGCGCTTAAAGAAAGTTAGCAAGATGATAGACCAACTCTTGGAGAAGATAATAGATGAGCATGAACAAGTTGCCAACTCTAAAAGTGGGAAACAAGGCCAGTATGAGGACTTTGCAGACATGTTTCTTTCGTTAAAGAACCAACCGTTGAACCTGAATGATGAGCAAGAACACTTTCTTGATCGAACAAATGTGAAAGCCATCTTACTAGACATGATCATAGCTTTTGATACTTCAATTGCATCGATTGTTTGGAGCCTTGCTGAGCTCTTGAGGCATCCAAGGATTATGAAGAAGCTCCTAGAAGAGCTCAAAAGTATGGTATATAGAGTTTCTGATATGGAACTTGTGAGAATTCTCACTAGTGCAGAAGATGAGGTCAACGTAGCTTGTTTTCATCCCTCTGTAGGAGGTGGCCTTGTTTATGGAACTAAGGAAGGGAAGTTAAGGATCCTCCAATATGATAGTTCTCATGCCGTGGGTCATACAACTTCCAATTTTCTTAATGAAAACATGCTAGCTAGAGGTACAACAAGGCCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

334

Amino Acids

37.64

Weight (kDa)

8.34

Isoelectric Point (pI)

25.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	32 - 264	1.2e-29	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	141
AccB7I	CCANNNNNTGG	2 cut(s)	83, 499
AciI	CCGC	2 cut(s)	206, 211
AclWI	GGATC	2 cut(s)	904, 917
AcsI	RAATTY	1 cut(s)	813
AcyI	GRCGYC	1 cut(s)	142
AfaI	GTAC	3 cut(s)	90, 95, 988
AfeI	AGCGCT	1 cut(s)	464
AfiI	CCNNNNNNNGG	4 cut(s)	83, 499, 565, 866
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	3 cut(s)	406, 610, 696
AhlI	ACTAGT	1 cut(s)	821
AluBI	AGCT	9 cut(s)	157, 244, 254, 683, 727, 757, 769, 848, 980
AluI	AGCT	9 cut(s)	157, 244, 254, 683, 727, 757, 769, 848, 980
Alw21I	GWGCWC	2 cut(s)	729, 771
AlwI	GGATC	2 cut(s)	904, 917
Aor51HI	AGCGCT	1 cut(s)	464
AoxI	GGCC	3 cut(s)	556, 874, 995
ApeKI	GCWGC	3 cut(s)	208, 254, 434
ApoI	RAATTY	1 cut(s)	813
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	2 cut(s)	144, 465
AspS9I	GGNCC	3 cut(s)	131, 310, 996
AsuHPI	GGTGA	3 cut(s)	71, 154, 278
AsuNHI	GCTAGC	1 cut(s)	976
AvaII	GGWCC	2 cut(s)	131, 310
BamHI	GGATCC	1 cut(s)	909
BanI	GGYRCC	1 cut(s)	141
BanII	GRGCYC	2 cut(s)	729, 771
Bbv12I	GWGCWC	2 cut(s)	729, 771
BbvI	GCAGC	3 cut(s)	195, 241, 421
BccI	CCATC	2 cut(s)	319, 668
BceAI	ACGGC	1 cut(s)	920
BclI	TGATCA	1 cut(s)	675
BcuI	ACTAGT	1 cut(s)	821
BfaI	CTAG	6 cut(s)	224, 668, 761, 822, 977, 981
BfmI	CTRYAG	2 cut(s)	255, 864
BfoI	RGCGCY	2 cut(s)	145, 466
BisI	GCNGC	4 cut(s)	206, 209, 255, 435
BlpI	GCTNAGC	1 cut(s)	723
BlsI	GCNGC	4 cut(s)	207, 210, 256, 436
BmcAI	AGTACT	1 cut(s)	90
Bme18I	GGWCC	2 cut(s)	131, 310
BmgT120I	GGNCC	3 cut(s)	131, 310, 996
BmiI	GGNNCC	4 cut(s)	143, 716, 911, 998
BmrI	ACTGGG	1 cut(s)	994
BmsI	GCATC	2 cut(s)	710, 745
BmtI	GCTAGC	1 cut(s)	980
BmuI	ACTGGG	1 cut(s)	994
Bpu1102I	GCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	751
Bsa29I	ATCGAT	1 cut(s)	704
BsaHI	GRCGYC	1 cut(s)	142
BsaJI	CCNNGG	3 cut(s)	82, 740, 936
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 499, 565, 866
Bse1I	ACTGG	2 cut(s)	559, 1000
BseCI	ATCGAT	1 cut(s)	704
BseDI	CCNNGG	3 cut(s)	82, 740, 936
BseGI	GGATG	3 cut(s)	330, 736, 856
BseLI	CCNNNNNNNGG	4 cut(s)	83, 499, 565, 866
BseMII	CTCAG	1 cut(s)	714
BseNI	ACTGG	2 cut(s)	559, 1000
BseXI	GCAGC	3 cut(s)	195, 241, 421
BsgI	GTGCAG	2 cut(s)	420, 846
BshFI	GGCC	3 cut(s)	558, 876, 997
BshNI	GGYRCC	1 cut(s)	141
BshVI	ATCGAT	1 cut(s)	704
BsiHKAI	GWGCWC	2 cut(s)	729, 771
BslI	CCNNNNNNNGG	4 cut(s)	83, 499, 565, 866
BsnI	GGCC	3 cut(s)	558, 876, 997
Bsp1286I	GDGCHC	2 cut(s)	729, 771
Bsp143I	GATC	3 cut(s)	640, 675, 909
Bsp1720I	GCTNAGC	1 cut(s)	723
BspACI	CCGC	2 cut(s)	206, 211
BspANI	GGCC	3 cut(s)	558, 876, 997
BspCNI	CTCAG	1 cut(s)	715
BspDI	ATCGAT	1 cut(s)	704
BspLI	GGNNCC	4 cut(s)	143, 716, 911, 998
BspMAI	CTGCAG	1 cut(s)	259
BspOI	GCTAGC	1 cut(s)	980
BspPI	GGATC	2 cut(s)	904, 917
BspQI	GCTCTTC	1 cut(s)	759
BspT107I	GGYRCC	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	559, 1000
BssECI	CCNNGG	3 cut(s)	82, 740, 936
BssMI	GATC	3 cut(s)	640, 675, 909
BssNI	GRCGYC	1 cut(s)	142
BssT1I	CCWWGG	2 cut(s)	82, 740
Bst4CI	ACNGT	2 cut(s)	93, 606
Bst6I	CTCTTC	1 cut(s)	759
BstACI	GRCGYC	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	978
BstDEI	CTNAG	3 cut(s)	459, 723, 891
BstDSI	CCRYGG	1 cut(s)	936
BstF5I	GGATG	3 cut(s)	330, 736, 856
BstH2I	RGCGCY	2 cut(s)	145, 466
BstHHI	GCGC	2 cut(s)	144, 465
BstKTI	GATC	3 cut(s)	643, 678, 912
BstMBI	GATC	3 cut(s)	640, 675, 909
BstMWI	GCNNNNNNNGC	1 cut(s)	733
BstNSI	RCATGY	2 cut(s)	583, 976
BstSFI	CTRYAG	2 cut(s)	255, 864
BstV1I	GCAGC	3 cut(s)	195, 241, 421
BstX2I	RGATCY	1 cut(s)	909
BstYI	RGATCY	1 cut(s)	909
Bsu15I	ATCGAT	1 cut(s)	704
BsuRI	GGCC	3 cut(s)	558, 876, 997
BsuTUI	ATCGAT	1 cut(s)	704
BtgI	CCRYGG	1 cut(s)	936
BtgZI	GCGATG	1 cut(s)	314
BtsCI	GGATG	3 cut(s)	330, 736, 856
Cac8I	GCNNGC	1 cut(s)	978
CfoI	GCGC	2 cut(s)	144, 465
Cfr13I	GGNCC	3 cut(s)	131, 310, 996
ClaI	ATCGAT	1 cut(s)	704
Csp6I	GTAC	3 cut(s)	89, 94, 987
CspCI	CAANNNNNGTGG	2 cut(s)	93, 128
CviAII	CATG	6 cut(s)	128, 521, 580, 673, 932, 973
CviQI	GTAC	3 cut(s)	89, 94, 987
DdeI	CTNAG	3 cut(s)	459, 723, 891
DinI	GGCGCC	1 cut(s)	143
DpnI	GATC	3 cut(s)	642, 677, 911
DpnII	GATC	3 cut(s)	640, 675, 909
DraI	TTTAAA	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Ecl136II	GAGCTC	2 cut(s)	727, 769
Eco130I	CCWWGG	2 cut(s)	82, 740
Eco24I	GRGCYC	2 cut(s)	729, 771
Eco47I	GGWCC	2 cut(s)	131, 310
Eco47III	AGCGCT	1 cut(s)	464
Eco53kI	GAGCTC	2 cut(s)	727, 769
EcoICRI	GAGCTC	2 cut(s)	727, 769
EcoO109I	RGGNCCY	1 cut(s)	996
EcoRI	GAATTC	1 cut(s)	813
EcoT14I	CCWWGG	2 cut(s)	82, 740
EcoT38I	GRGCYC	2 cut(s)	729, 771
EgeI	GGCGCC	1 cut(s)	143
EheI	GGCGCC	1 cut(s)	143
ErhI	CCWWGG	2 cut(s)	82, 740
FaeI	CATG	6 cut(s)	131, 524, 583, 676, 935, 976
FatI	CATG	6 cut(s)	127, 520, 579, 672, 931, 972
FbaI	TGATCA	1 cut(s)	675
Fnu4HI	GCNGC	4 cut(s)	206, 209, 255, 435
FokI	GGATG	3 cut(s)	337, 723, 843
FriOI	GRGCYC	2 cut(s)	729, 771
Fsp4HI	GCNGC	4 cut(s)	206, 209, 255, 435
FspBI	CTAG	6 cut(s)	224, 668, 761, 822, 977, 981
GlaI	GCGC	2 cut(s)	143, 464
GluI	GCNGC	4 cut(s)	206, 209, 255, 435
HaeII	RGCGCY	2 cut(s)	145, 466
HaeIII	GGCC	3 cut(s)	558, 876, 997
HhaI	GCGC	2 cut(s)	144, 465
Hin1I	GRCGYC	1 cut(s)	142
Hin1II	CATG	6 cut(s)	131, 524, 583, 676, 935, 976
Hin6I	GCGC	2 cut(s)	142, 463
HinP1I	GCGC	2 cut(s)	142, 463
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	1 cut(s)	38
HphI	GGTGA	3 cut(s)	71, 154, 278
Hpy166II	GTNNAC	2 cut(s)	310, 841
Hpy188I	TCNGA	2 cut(s)	415, 796
Hpy188III	TCNNGA	3 cut(s)	391, 638, 730
Hpy8I	GTNNAC	2 cut(s)	310, 841
HpyAV	CCTTC	3 cut(s)	176, 211, 890
HpyCH4III	ACNGT	2 cut(s)	93, 606
HpyCH4IV	ACGT	2 cut(s)	317, 843
HpyCH4V	TGCA	5 cut(s)	257, 437, 575, 701, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	733
HpyF3I	CTNAG	3 cut(s)	459, 723, 891
HpySE526I	ACGT	2 cut(s)	317, 843
Hsp92I	GRCGYC	1 cut(s)	142
Hsp92II	CATG	6 cut(s)	131, 524, 583, 676, 935, 976
HspAI	GCGC	2 cut(s)	142, 463
KasI	GGCGCC	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	675
Kzo9I	GATC	3 cut(s)	640, 675, 909
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	3 cut(s)	27, 714, 762
LpnPI	CCDG	5 cut(s)	27, 218, 434, 572, 626
Lsp1109I	GCAGC	3 cut(s)	195, 241, 421
LweI	GCATC	2 cut(s)	710, 745
MaeI	CTAG	6 cut(s)	224, 668, 761, 822, 977, 981
MaeII	ACGT	2 cut(s)	317, 843
MalI	GATC	3 cut(s)	642, 677, 911
MboI	GATC	3 cut(s)	640, 675, 909
MboII	GAAGA	6 cut(s)	226, 301, 517, 763, 776, 842
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	909
MhlI	GDGCHC	2 cut(s)	729, 771
MluCI	AATT	4 cut(s)	189, 696, 813, 955
Mly113I	GGCGCC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	9 cut(s)	187, 370, 559, 726, 829, 863, 871, 923, 977
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	5 cut(s)	362, 467, 593, 905, 963
MspA1I	CMGCKG	1 cut(s)	208
MunI	CAATTG	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	733
NarI	GGCGCC	1 cut(s)	142
NdeII	GATC	3 cut(s)	640, 675, 909
NheI	GCTAGC	1 cut(s)	976
NlaIII	CATG	6 cut(s)	131, 524, 583, 676, 935, 976
NlaIV	GGNNCC	4 cut(s)	143, 716, 911, 998
NspI	RCATGY	2 cut(s)	583, 976
PciI	ACATGT	1 cut(s)	579
PciSI	GCTCTTC	1 cut(s)	759
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	38
PflMI	CCANNNNNTGG	2 cut(s)	83, 499
PkrI	GCNGC	4 cut(s)	207, 210, 256, 436
PluTI	GGCGCC	1 cut(s)	145
PscI	ACATGT	1 cut(s)	579
Psp124BI	GAGCTC	2 cut(s)	729, 771
PspN4I	GGNNCC	4 cut(s)	143, 716, 911, 998
PspPI	GGNCC	3 cut(s)	131, 310, 996
PstI	CTGCAG	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	909
RsaI	GTAC	3 cut(s)	90, 95, 988
RsaNI	GTAC	3 cut(s)	89, 94, 987
SacI	GAGCTC	2 cut(s)	729, 771
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	5 cut(s)	362, 467, 593, 905, 963
SatI	GCNGC	4 cut(s)	206, 209, 255, 435
Sau3AI	GATC	3 cut(s)	640, 675, 909
Sau96I	GGNCC	3 cut(s)	131, 310, 996
ScaI	AGTACT	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	729, 771
SfaNI	GCATC	2 cut(s)	710, 745
SfcI	CTRYAG	2 cut(s)	255, 864
SfoI	GGCGCC	1 cut(s)	143
SinI	GGWCC	2 cut(s)	131, 310
SmlI	CTYRAG	1 cut(s)	730
SmoI	CTYRAG	1 cut(s)	730
SpeI	ACTAGT	1 cut(s)	821
Sse9I	AATT	4 cut(s)	189, 696, 813, 955
SsiI	CCGC	2 cut(s)	206, 211
SspDI	GGCGCC	1 cut(s)	141
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	6 cut(s)	224, 668, 761, 822, 977, 981
SstI	GAGCTC	2 cut(s)	729, 771
StyI	CCWWGG	2 cut(s)	82, 740
TaaI	ACNGT	2 cut(s)	93, 606
TaiI	ACGT	2 cut(s)	320, 846
TaqI	TCGA	3 cut(s)	201, 643, 704
TasI	AATT	4 cut(s)	189, 696, 813, 955
TatI	WGTACW	2 cut(s)	88, 93
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	5 cut(s)	362, 467, 593, 905, 963
Tru9I	TTAA	5 cut(s)	362, 467, 593, 905, 963
TseI	GCWGC	3 cut(s)	208, 254, 434
TspDTI	ATGAA	8 cut(s)	17, 51, 158, 317, 537, 764, 845, 981
Van91I	CCANNNNNTGG	2 cut(s)	83, 499
VpaK11BI	GGWCC	2 cut(s)	131, 310
XapI	RAATTY	1 cut(s)	813
XceI	RCATGY	2 cut(s)	583, 976
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	6 cut(s)	224, 668, 761, 822, 977, 981
ZrmI	AGTACT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.