Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

50361139 .. 50365653

Gene Structure 4515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32792

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGTTATTCGATCTGGGAAATAGCGAAGGCCTTCATCGACGACCACTTTGAGCTCGCCATTGACCTCTACACCCAGGCCACCGCCGTCGACCCCAACAAATCCGAGTTCTACTCCGACCGCGCTCAGGCCAACATCAAATCCAACAATCTCACTGAGGCTGTAGAAAACCTAATGGGTAGACCTCTAGTGTTTTTCAGATATTTCGGCAGTGGCGTGTTGCTTTCGGTGGATTCGAAATTCAGCTATGGGCAACCAAGATTTAAATTCGAACGTTGGAGCTATGGATTTGGGATTGAAGGCAAAAATGTCAAAATTGGGGCTAAGAAGATAACTAAGAAGGTTTCTGGCTTGGTTCTGCAGAAGATTTTATGCAACAATCAAAGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

130

Amino Acids

14.73

Weight (kDa)

9.19

Isoelectric Point (pI)

26.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 181
AccII	CGCG	1 cut(s)	123
AciI	CCGC	2 cut(s)	84, 121
AclI	AACGTT	1 cut(s)	274
AcsI	RAATTY	2 cut(s)	239, 266
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	3 cut(s)	55, 246, 282
AluI	AGCT	3 cut(s)	55, 246, 282
Alw21I	GWGCWC	1 cut(s)	57
AoxI	GGCC	3 cut(s)	30, 78, 129
ApoI	RAATTY	2 cut(s)	239, 266
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	125
AsuII	TTCGAA	2 cut(s)	236, 270
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	57
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	77
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	2 cut(s)	162, 359
Bme1390I	CCNGG	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu10I	CCTNAGC	1 cut(s)	126
Bpu14I	TTCGAA	2 cut(s)	236, 270
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	140, 147
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	32, 80, 131
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	3 cut(s)	32, 80, 131
Bsp119I	TTCGAA	2 cut(s)	236, 270
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	2 cut(s)	84, 121
BspANI	GGCC	3 cut(s)	32, 80, 131
BspCNI	CTCAG	2 cut(s)	139, 148
BspFNI	CGCG	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	363
BspT104I	TTCGAA	2 cut(s)	236, 270
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	77
BstBI	TTCGAA	2 cut(s)	236, 270
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	4 cut(s)	126, 156, 324, 336
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMCI	CGRYCG	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	2 cut(s)	162, 359
BstUI	CGCG	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	32, 80, 131
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	2 cut(s)	153, 217
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	125
CviJI	RGCY	9 cut(s)	32, 55, 80, 131, 161, 246, 282, 323, 351
CviKI_1	RGCY	9 cut(s)	32, 55, 80, 131, 161, 246, 282, 323, 351
DdeI	CTNAG	4 cut(s)	126, 156, 324, 336
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
DraI	TTTAAA	1 cut(s)	265
Ecl136II	GAGCTC	1 cut(s)	55
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	57
FaiI	YATR	4 cut(s)	249, 285, 373, 391
FblI	GTMKAC	2 cut(s)	90, 181
FriOI	GRGCYC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	32, 80, 131
HhaI	GCGC	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	91, 182
Hpy188I	TCNGA	3 cut(s)	106, 118, 200
Hpy8I	GTNNAC	2 cut(s)	91, 182
Hpy99I	CGWCG	2 cut(s)	44, 92
HpyAV	CCTTC	4 cut(s)	22, 43, 293, 334
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	361, 375
HpyF3I	CTNAG	4 cut(s)	126, 156, 324, 336
HpySE526I	ACGT	1 cut(s)	274
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	4 cut(s)	62, 89, 113, 333
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	1 cut(s)	274
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	2 cut(s)	340, 376
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	3 cut(s)	239, 266, 315
MmeI	TCCRAC	3 cut(s)	141, 168, 257
MnlI	CCTC	3 cut(s)	77, 151, 195
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	123
NdeII	GATC	1 cut(s)	12
NspV	TTCGAA	2 cut(s)	236, 270
PceI	AGGCCT	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 233
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	233
Psp124BI	GAGCTC	1 cut(s)	57
Psp1406I	AACGTT	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	8 cut(s)	57, 69, 174, 187, 248, 277, 284, 345
SfcI	CTRYAG	2 cut(s)	162, 359
SfuI	TTCGAA	2 cut(s)	236, 270
SmiI	ATTTAAAT	1 cut(s)	265
Sse9I	AATT	3 cut(s)	239, 266, 315
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	2 cut(s)	84, 121
SspMI	CTAG	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	75
SwaI	ATTTAAAT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	5 cut(s)	11, 39, 90, 236, 270
TasI	AATT	3 cut(s)	239, 266, 315
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	160, 217
TspDTI	ATGAA	1 cut(s)	25
TspRI	CASTG	2 cut(s)	160, 217
XapI	RAATTY	2 cut(s)	239, 266
XmiI	GTMKAC	2 cut(s)	90, 181
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.